Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B11_e82_03.seq
         (1544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0595 + 4391877-4392005,4392155-4392287,4392402-4392490,439...    29   9.9  

>03_01_0595 +
           4391877-4392005,4392155-4392287,4392402-4392490,
           4392639-4392696,4393182-4393337,4393556-4393704,
           4394208-4394327,4394513-4394726,4394813-4394915,
           4395022-4395069,4395267-4395312,4395647-4395834,
           4395943-4396105,4396227-4396292
          Length = 553

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 214 KKLKYEYRHLMVS*RNIHKFYKCMKYFCITYLFDNLSKIVLTLVPRAE 71
           +KLK  Y HL+ S  ++   Y  M   C  Y   N S + L   P  E
Sbjct: 387 RKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEE 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,954,472
Number of Sequences: 37544
Number of extensions: 377712
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)