Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B11_e82_03.seq
         (1544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52229-1|CAA36478.1|  515|Homo sapiens precursor polypeptide (AA...    33   2.8  
X52228-1|CAA36477.1|  347|Homo sapiens precursor polypeptide (AA...    33   2.8  

>X52229-1|CAA36478.1|  515|Homo sapiens precursor polypeptide (AA -21
            to 494) protein.
          Length = 515

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
 Frame = +2

Query: 1361 SPRXRXXXXXPEGNXXXGXS--PXXGPXXXPSXRPPXGXLAGPAHXXXXXXXAHPP 1522
            +P        P+     G +  P  G    P  RPP G  A PAH         PP
Sbjct: 112  TPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPPPGSTAPPAHGVTSAPDTRPP 167


>X52228-1|CAA36477.1|  347|Homo sapiens precursor polypeptide (AA -21
            to 326) protein.
          Length = 347

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
 Frame = +2

Query: 1361 SPRXRXXXXXPEGNXXXGXS--PXXGPXXXPSXRPPXGXLAGPAHXXXXXXXAHPP 1522
            +P        P+     G +  P  G    P  RPP G  A PAH         PP
Sbjct: 112  TPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPPPGSTAPPAHGVTSAPDTRPP 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,906,990
Number of Sequences: 237096
Number of extensions: 2175646
Number of successful extensions: 5658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5654
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23074645414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)