Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B11_e82_03.seq
         (1544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    30   5.0  

>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 692 IIMPSXIFRC*LXHNRWYRFINHYXVFLHHSIMW 591
           +I  + +F C +   ++Y F   Y +FL+++I W
Sbjct: 263 VITMALLFECTIFVLQYYNFFQEYEIFLYYAIDW 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,381,305
Number of Sequences: 27780
Number of extensions: 337335
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)