Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B11_e82_03.seq
         (1544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14210.2 68417.m02193 phytoene dehydrogenase, chloroplast / p...    31   2.0  
At4g14210.1 68417.m02192 phytoene dehydrogenase, chloroplast / p...    31   2.0  

>At4g14210.2 68417.m02193 phytoene dehydrogenase, chloroplast /
           phytoene desaturase (PDS) identical to SP|Q07356
           Phytoene dehydrogenase, chloroplast precursor (EC
           1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana};
           high similarity to phytoene desaturase [Lycopersicon
           esculentum][GI:19287]
          Length = 566

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 214 KKLKYEYRHLMVS*RNIHKFYKCMKYFCITYLFDNLSKIVLTLVPRAE 71
           +KLK  Y HL+ S  N+   Y  M   C  Y   N S + L   P  E
Sbjct: 400 RKLKNTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEE 447


>At4g14210.1 68417.m02192 phytoene dehydrogenase, chloroplast /
           phytoene desaturase (PDS) identical to SP|Q07356
           Phytoene dehydrogenase, chloroplast precursor (EC
           1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana};
           high similarity to phytoene desaturase [Lycopersicon
           esculentum][GI:19287]
          Length = 566

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 214 KKLKYEYRHLMVS*RNIHKFYKCMKYFCITYLFDNLSKIVLTLVPRAE 71
           +KLK  Y HL+ S  N+   Y  M   C  Y   N S + L   P  E
Sbjct: 400 RKLKNTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEE 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,828,815
Number of Sequences: 28952
Number of extensions: 290128
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)