Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B10_e74_04.seq
         (1430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    34   0.055
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   1.6  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    29   2.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   2.8  
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    27   4.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 188 LRVRTVFIQALNSGVISIFLTYKKNTNSKINS-LSVFLPRPNSCS 57
           L +RT ++ A    +++ FL Y K  NSK ++ LS+FLP P  C+
Sbjct: 442 LNIRTFYLTAFLCALLN-FLRYLKYRNSKKDTELSLFLPAPEECN 485


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 31/125 (24%), Positives = 53/125 (42%)
 Frame = +1

Query: 334 RYLSFFNNESENDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVSVSDQTREYMDAV 513
           R+L     +      E D D  D   + I+N    L + FR DN     S+   +     
Sbjct: 260 RHLELILKQIYEKKLEEDADAKDIAPRAIVNFWRLLTELFRGDNDTPEKSNALPD----- 314

Query: 514 IDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLELPQSKSIILNPFVSDKDPEKRKTL 693
            D +D +LK+   I S    L     L + +  + EL  S  ++ +  V D++ +K K L
Sbjct: 315 -DELDKHLKSDFDIESFCFLLH--HLLSLYQTQKKELASSNELLAS--VRDENTKKLKEL 369

Query: 694 QEDVD 708
           Q+ ++
Sbjct: 370 QDIIE 374


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 349 FNNESENDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVSVSDQTRE 498
           F+  S+ND+SE D +  ++   +I    + +  + +N+N+   V +Q  E
Sbjct: 712 FSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSE 761


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 376  SELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVSVSDQTREYMDAVIDLVDAYLKAVCKI 555
            SELD ++      RI  + + +L + ++DN+ +S+     EY+  +    D YL+   KI
Sbjct: 1095 SELDENKKRKPKYRIKLSGNPILGDGKSDNQNLSLPFYRGEYIQLIDANQDNYLEECLKI 1154

Query: 556  HSEL 567
             S L
Sbjct: 1155 RSIL 1158


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 535 LKAVCKIHSELKALRVKRALDIRKLSRLELPQSKSIILNPFVSDKDPEKRKTLQED 702
           ++A+ K     + +RV  A  I+K++R +  Q K+     F + K   KRK+ Q+D
Sbjct: 79  VEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQQD 134


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +1

Query: 391 DQIDTGAQRIINTCSHLLKEFRNDNRKVSVSDQTREYMDAVIDLVDAYLKAVCKIHSELK 570
           D      +R++NT + +LKE +  +  +   D T  Y  ++  L      ++  +H E K
Sbjct: 249 DSFSVSERRLVNTRAVVLKEVQAPSHILMSKDSTSIYTISLEGL------SIYSLHDESK 302

Query: 571 ALRVKRALDIRKLSRLE 621
           +  + + L  + +S++E
Sbjct: 303 SYMLIKILHFQSISKIE 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,870,903
Number of Sequences: 5004
Number of extensions: 67587
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 796858378
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)