Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B10_e74_04.seq
         (1430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    33   0.73 
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    30   3.9  
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657...    29   6.8  
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598...    29   6.8  
03_05_1070 + 30125131-30127029                                         29   6.8  

>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 328 RDRYLSFFNNESENDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVSVSDQTR 495
           R R+ S FN+ S  D+ E+DRD   +G    I+   HLL  +      +  S  +R
Sbjct: 628 RHRFSSIFNSFSAQDLIEMDRDDEQSGRMEEIH--KHLLDAYSQGTTNMDNSSSSR 681


>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
            25979135-25979254,25979357-25979532,25979624-25980107,
            25980541-25980744,25981671-25981877,25982179-25982271,
            25982433-25982621,25983364-25983423,25983591-25983927,
            25984195-25984432,25984614-25984816,25985549-25986554,
            25987125-25987290,25987715-25987824,25987944-25988195,
            25988360-25988402,25988488-25988550,25989512-25989624,
            25990787-25990838
          Length = 1824

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 538  LNMHLLDLSRHPCI-HVFDQRLKLCDY 461
            LN H  +L+RHP I  + D+ L+LCDY
Sbjct: 1780 LNAHTYNLNRHPHIPPLADELLELCDY 1806


>12_02_0776 -
           23064167-23064239,23065214-23065518,23065614-23065727,
           23065812-23065918,23065997-23066143,23066227-23066326,
           23066421-23066522,23066702-23066776,23066973-23067152,
           23067266-23067355,23067435-23067559,23067847-23067910,
           23067993-23068197,23068818-23068966
          Length = 611

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 275 AVVMKPFFVLLLSKRCLSSLTGLCIPNALLRVRTVFIQALNSGV 144
           AVV+KP+F+ L++   +  L GL +  A+ R   V +   N  V
Sbjct: 236 AVVLKPWFIALVAAGAIERLAGLALGVAMERDWVVLLAGTNRPV 279


>11_01_0724 +
           5981680-5981748,5982301-5982397,5982496-5982593,
           5983535-5983690,5983986-5984063,5984135-5984266,
           5984856-5984936,5985442-5985510,5985597-5985686,
           5986001-5986145,5986218-5986276,5986384-5986479,
           5986561-5986628,5986704-5986803,5986910-5986966,
           5987179-5987337
          Length = 517

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 377 PSWTAIK*TLGPKESSIHVLTY*KSSGMIIAKF 475
           PS T I  TLGP   S+ V+    ++GM +A+F
Sbjct: 27  PSLTKIVGTLGPNSHSVEVIQECLTAGMAVARF 59


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 472 VSVSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLS 612
           +++ D  R Y D V   VD YLKA  ++ +E +  RV   +D RKL+
Sbjct: 405 LALPDHARVYDDGVYRAVDIYLKAHPRLAAEERD-RVCGVVDCRKLT 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,408,725
Number of Sequences: 37544
Number of extensions: 388344
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4536424228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)