Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B10_e74_04.seq
         (1430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   33   0.74 
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)                 32   0.98 
SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_53753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  

>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 32.7 bits (71), Expect = 0.74
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 244  SKTKNGFITTAKDICSQITRLRDFLLEHRDRYLSFFNNESENDMSELDRDQIDTGAQRII 423
            S+  +  I+ A     +   +RD+L E     LS+FN+ + + +  + R  +D+  +RI 
Sbjct: 901  SRLGSAAISPAAAAAKRKREMRDYLAEEAQELLSYFNHRNVDAIVRVTRATLDSTRRRIA 960

Query: 424  NTCSH 438
             + +H
Sbjct: 961  ASAAH 965


>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
          Length = 337

 Score = 32.3 bits (70), Expect = 0.98
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
 Frame = +1

Query: 238 LRSKTKNG--FITTAKDICSQITRLRDFLLEHRDRYLSFFNNESENDMSELDRDQIDT-G 408
           L+ KT+    +    KD  S+I RL+D  +E+RD +L+        D SE ++D+I+   
Sbjct: 140 LKDKTREAEKYQRQIKDNESEIQRLKD-AIEYRDNWLAERGLNLYEDNSESNKDEINVFE 198

Query: 409 AQRIINTC--SHLLKEFRNDNRKVSVSDQTREYMDAVIDLVDAYLKAVCKIHSELKALR 579
           + R  +T   S   K   +++R  S S ++     +V D  +  +  + K+  E+ +LR
Sbjct: 199 SLREGSTIDESGSEKSSFSESRSRSDSQRSSSMQPSVTDDREVLVAQIKKLQEEVSSLR 257


>SB_26244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 373 MSELDRDQIDTGAQRIINTCSHLLKEFRND 462
           M++ +RDQID  AQ  + TC + +K  +N+
Sbjct: 1   MTDTERDQIDNDAQMYMRTCHNSIKLLKNE 30


>SB_53753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 114 HEFKNKFAFSISASAEFLQPXGSTS 40
           H+F+  F F +  S EFLQP GSTS
Sbjct: 116 HQFQI-FTFLLKESIEFLQPGGSTS 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,590,125
Number of Sequences: 59808
Number of extensions: 484106
Number of successful extensions: 2339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4589470807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)