Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B10_e74_04.seq
         (1430 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007150-1|AAP35814.1|  335|Homo sapiens syntaxin 18 protein.         136   1e-31
BC014613-1|AAH14613.1|  335|Homo sapiens syntaxin 18 protein.         136   1e-31
AY453396-1|AAS47513.1|  335|Homo sapiens growth-inhibiting prote...   136   1e-31
AB028741-1|BAA95213.1|  335|Homo sapiens syntaxin 18 protein.         136   1e-31
BT020135-1|AAV38937.1|  335|Homo sapiens syntaxin 18 protein.         135   4e-31
AB046860-1|BAB13466.1|  940|Homo sapiens KIAA1640 protein protein.     33   2.6  
BC035251-1|AAH35251.1| 1031|Homo sapiens coiled-coil domain cont...    33   3.4  

>BT007150-1|AAP35814.1|  335|Homo sapiens syntaxin 18 protein.
          Length = 335

 Score =  136 bits (330), Expect = 1e-31
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 6/168 (3%)
 Frame = +1

Query: 136 MDITPLFKACIKTVRTRNKAFGIQ--SPVSEDKQRLLRS--KTKNGFITTAKDICSQITR 303
           +DIT LF+A +KTV+TRNKA G+     V   +  L R   + K  F + A+++ S I +
Sbjct: 3   VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGK 62

Query: 304 LRDFLLEHRDRYLSFFNNE-SE-NDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVS 477
           LRDFLLEHR  Y++ +++  SE   M++ +RDQID  AQ  + TCS  +++ R +  K  
Sbjct: 63  LRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEI 122

Query: 478 VSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLE 621
            S Q +E+  AV+D ++ YLK VCK++SE +A+RVKR +D ++LS+LE
Sbjct: 123 HSQQVKEHRTAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLE 170


>BC014613-1|AAH14613.1|  335|Homo sapiens syntaxin 18 protein.
          Length = 335

 Score =  136 bits (330), Expect = 1e-31
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 6/168 (3%)
 Frame = +1

Query: 136 MDITPLFKACIKTVRTRNKAFGIQ--SPVSEDKQRLLRS--KTKNGFITTAKDICSQITR 303
           +DIT LF+A +KTV+TRNKA G+     V   +  L R   + K  F + A+++ S I +
Sbjct: 3   VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGK 62

Query: 304 LRDFLLEHRDRYLSFFNNE-SE-NDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVS 477
           LRDFLLEHR  Y++ +++  SE   M++ +RDQID  AQ  + TCS  +++ R +  K  
Sbjct: 63  LRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEI 122

Query: 478 VSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLE 621
            S Q +E+  AV+D ++ YLK VCK++SE +A+RVKR +D ++LS+LE
Sbjct: 123 HSQQVKEHRTAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLE 170


>AY453396-1|AAS47513.1|  335|Homo sapiens growth-inhibiting protein
           9 protein.
          Length = 335

 Score =  136 bits (330), Expect = 1e-31
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 6/168 (3%)
 Frame = +1

Query: 136 MDITPLFKACIKTVRTRNKAFGIQ--SPVSEDKQRLLRS--KTKNGFITTAKDICSQITR 303
           +DIT LF+A +KTV+TRNKA G+     V   +  L R   + K  F + A+++ S I +
Sbjct: 3   VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGK 62

Query: 304 LRDFLLEHRDRYLSFFNNE-SE-NDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVS 477
           LRDFLLEHR  Y++ +++  SE   M++ +RDQID  AQ  + TCS  +++ R +  K  
Sbjct: 63  LRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEI 122

Query: 478 VSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLE 621
            S Q +E+  AV+D ++ YLK VCK++SE +A+RVKR +D ++LS+LE
Sbjct: 123 HSQQVKEHRTAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLE 170


>AB028741-1|BAA95213.1|  335|Homo sapiens syntaxin 18 protein.
          Length = 335

 Score =  136 bits (330), Expect = 1e-31
 Identities = 72/168 (42%), Positives = 110/168 (65%), Gaps = 6/168 (3%)
 Frame = +1

Query: 136 MDITPLFKACIKTVRTRNKAFGIQ--SPVSEDKQRLLRS--KTKNGFITTAKDICSQITR 303
           +DIT LF+A +KTV+TRNKA G+     V   +  L R   + K  F + A+++ S I +
Sbjct: 3   VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGK 62

Query: 304 LRDFLLEHRDRYLSFFNNE-SE-NDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVS 477
           LRDFLLEHR  Y++ +++  SE   M++ +RDQID  AQ  + TCS  +++ R +  K  
Sbjct: 63  LRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEI 122

Query: 478 VSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLE 621
            S Q +E+  AV+D ++ YLK VCK++SE +A+RVKR +D ++LS+LE
Sbjct: 123 HSQQVKEHRTAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLE 170


>BT020135-1|AAV38937.1|  335|Homo sapiens syntaxin 18 protein.
          Length = 335

 Score =  135 bits (326), Expect = 4e-31
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 6/168 (3%)
 Frame = +1

Query: 136 MDITPLFKACIKTVRTRNKAFGIQ--SPVSEDKQRLLRS--KTKNGFITTAKDICSQITR 303
           +DIT LF+  +KTV+TRNKA G+     V   +  L R   + K  F + A+++ S I +
Sbjct: 3   VDITLLFRVSVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGDFSSRAREVISHIGK 62

Query: 304 LRDFLLEHRDRYLSFFNNE-SE-NDMSELDRDQIDTGAQRIINTCSHLLKEFRNDNRKVS 477
           LRDFLLEHR  Y++ +++  SE   M++ +RDQID  AQ  + TCS  +++ R +  K  
Sbjct: 63  LRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEI 122

Query: 478 VSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRKLSRLE 621
            S Q +E+  AV+D ++ YLK VCK++SE +A+RVKR +D ++LS+LE
Sbjct: 123 HSQQVKEHRTAVLDFIEDYLKRVCKLYSEQRAIRVKRVVDKKRLSKLE 170


>AB046860-1|BAB13466.1|  940|Homo sapiens KIAA1640 protein protein.
          Length = 940

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 30/147 (20%), Positives = 64/147 (43%)
 Frame = +1

Query: 247 KTKNGFITTAKDICSQITRLRDFLLEHRDRYLSFFNNESENDMSELDRDQIDTGAQRIIN 426
           K  N  IT ++   S+I+R R  L+E +   ++F N + E  +SEL  +++    +  I 
Sbjct: 501 KKVNELITNSQ---SEISR-RTILIERKQGLINFLNKQLERMVSELGGEEVGP-LELEIK 555

Query: 427 TCSHLLKEFRNDNRKVSVSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRK 606
             S L+ E  +D + V            ++ +     + +  + +  K L +     +R 
Sbjct: 556 RLSKLIDE--HDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRV 613

Query: 607 LSRLELPQSKSIILNPFVSDKDPEKRK 687
            S++E  + +   +   + D D + +K
Sbjct: 614 ESKIEQEKKEQKEIEHHMKDLDNDLKK 640


>BC035251-1|AAH35251.1| 1031|Homo sapiens coiled-coil domain
            containing 40 protein.
          Length = 1031

 Score = 32.7 bits (71), Expect = 3.4
 Identities = 30/147 (20%), Positives = 64/147 (43%)
 Frame = +1

Query: 247  KTKNGFITTAKDICSQITRLRDFLLEHRDRYLSFFNNESENDMSELDRDQIDTGAQRIIN 426
            K  N  IT ++   S+I+R R  L+E +   ++F N + E  +SEL  +++    +  I 
Sbjct: 703  KKVNELITNSQ---SEISR-RTILIERKQGLINFLNKQLERMVSELGGEEVGP-LELEIK 757

Query: 427  TCSHLLKEFRNDNRKVSVSDQTREYMDAVIDLVDAYLKAVCKIHSELKALRVKRALDIRK 606
              S L+ E  +D + V            ++ +     + +  + +  K L +     +R 
Sbjct: 758  RLSKLIDE--HDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRV 815

Query: 607  LSRLELPQSKSIILNPFVSDKDPEKRK 687
             S++E  + +   +   + D D + +K
Sbjct: 816  GSKIEQEKKEQKEIEHHMKDLDNDLKK 842


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,613,426
Number of Sequences: 237096
Number of extensions: 2248605
Number of successful extensions: 3673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3663
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 20991898322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)