Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B10_e74_04.seq
         (1430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 387 PRSNRHWGPKNHQYMFSLTERVQE 458
           P+S R   P+ ++YM +L+ R+Q+
Sbjct: 367 PQSGRINDPEGNEYMLALSNRMQK 390


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 132 KYGYNTAIQSLYKNCTYTQQ 191
           KY YN   + LY N  Y +Q
Sbjct: 97  KYNYNNNCKKLYYNINYIEQ 116


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -1

Query: 278 FAVVMKPFFVLLLSKRCLSSLTGLCIPNALLRVRTVFIQALNSGVISIFLT 126
           F +   PFF   +     + LT  C P     + T ++  +NS V  +  T
Sbjct: 628 FLICWLPFFTCNIMDAICTKLTADCQPGVTAFIVTSWLGYMNSFVNPVIYT 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,068
Number of Sequences: 438
Number of extensions: 5147
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49946208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)