Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B07_e50_03.seq
(1508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631... 32 1.4
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 31 1.8
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 31 3.1
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 30 5.5
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 30 5.5
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 7.2
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 29 9.6
>12_02_1034 -
25562214-25562280,25562661-25562794,25562990-25563109,
25563331-25563510,25563847-25564020,25564466-25564639,
25564734-25564827,25566088-25566242
Length = 365
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 287 GASEKQCVRESLMHCSRVRLLYDCFLFHSRFTANFR*FLFC 165
G K CV ES+ H VR+ + LF +R N+ F+FC
Sbjct: 84 GHFRKGCVLESMEHYEEVRVKDNSLLFLNREKDNYLFFIFC 124
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 385 VLLVPANTYRPLVNSVQ*PAVSIQVGLMIDPPQVPPKSNACGNLSCTALES 233
VLL AN++ + V PA+++ V L+ PP + KS++ GN A ++
Sbjct: 903 VLLDAANSFGYVDPEVICPALNVLVNLVCPPPSISNKSSSTGNQQPAATQA 953
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 30.7 bits (66), Expect = 3.1
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 165 TKQKLSEISSKPAVEQ--KTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILTAGHC 338
+K+ +S KP +++ K + E D R+ GGT G I+ + L
Sbjct: 303 SKENMSRHLRKPKLDELRKLIYESMDEEEFERRWADFKENGGTGNGQWIALMYRLREKWA 362
Query: 339 TLFTSGRYVLAGTNNTNDDS 398
+T G+Y+L +N +S
Sbjct: 363 AAYTDGKYLLGMRSNQCSES 382
>03_06_0570 - 34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 385 VLLVPANTYRPLVNSVQ*PAVSIQVGLMIDPPQVPPKSNAC 263
VL VP++ + + + V+ VS+++G+ + PP P NAC
Sbjct: 899 VLGVPSSIHPVITDGVKPGEVSLEIGMTVPPP--APSCNAC 937
Score = 29.1 bits (62), Expect = 9.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 307 LMIDPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVC 161
LM+D P + C L + + FST V GL L+SD+ +C
Sbjct: 567 LMLDRPLANSAHHYCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLIC 615
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 29.9 bits (64), Expect = 5.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 288 RCLRKAMRAGISHALLSSQTSLRLFSVPQQVY 193
+CL +A+ AG+ HALL S+ +L ++ + Y
Sbjct: 1366 KCLVQALDAGLEHALLGSEMTLDRYAAAEGFY 1397
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 29.5 bits (63), Expect = 7.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 237 SRAVHERFPHALLFGGTCGGSIISPTWILTAGHCTLFT 350
S VH P A GG G ++ PT I TA C T
Sbjct: 327 SGGVHHHLPFASAVGGGGGVGLLGPTTISTATSCPTVT 364
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 29.1 bits (62), Expect = 9.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 335 LYTV-HQRPVCVSRHQQY-KRRQWCYAFSETAGNPSAIQCR 451
LYT+ H+ P+C RH QY + R+ C A + + S CR
Sbjct: 454 LYTIIHRSPICPPRHLQYIQLREICTATGLWSPHVSEQYCR 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,818,662
Number of Sequences: 37544
Number of extensions: 499062
Number of successful extensions: 1239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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