Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B07_e50_03.seq
(1508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 51 2e-06
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-06
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 45 1e-04
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-04
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 40 0.004
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 40 0.004
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 40 0.005
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.007
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.016
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.016
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 38 0.021
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.021
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.028
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.037
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.037
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.037
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.037
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 37 0.037
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.037
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.037
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.048
SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012) 37 0.048
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 36 0.064
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.064
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.084
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.084
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08) 36 0.084
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.15
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 35 0.20
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0) 34 0.26
SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.26
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 34 0.26
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.26
SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.34
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44) 33 0.45
SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12) 33 0.45
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 33 0.45
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 32 1.0
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 32 1.0
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 31 1.8
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 31 3.2
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 31 3.2
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0) 30 5.5
SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49) 29 7.3
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08) 29 7.3
SB_56353| Best HMM Match : I-set (HMM E-Value=6.3e-15) 29 9.7
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 51.2 bits (117), Expect = 2e-06
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Frame = +3
Query: 189 SSKPAVEQKTVVE---KSDSRAVHER---FPHALLFGGT--CGGSIISPTWILTAGHC-- 338
SS+PAV T+V KS + R F AL G+ CGGS++SPTW++TA HC
Sbjct: 52 SSRPAVSDATLVVVTGKSFIIVIISRYFFFQIALERSGSFICGGSLVSPTWVVTAAHCIA 111
Query: 339 -TLFTSGRYVLAGTNNTNDDSGVMRS--VKRLVIHPLFS 446
+ T V+ G + N G ++ VKR++ HP ++
Sbjct: 112 GSSHTPSYKVVTGEHIRNSPEGTEQTHDVKRIITHPTYN 150
Score = 39.9 bits (89), Expect = 0.005
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC--TLFTSGRYVLAGTNNTNDDSGVMRSVK--RLVIHP 437
CGGS+I P W+LTA HC + + + G +N + G+ + +K ++++HP
Sbjct: 690 CGGSLIHPQWVLTATHCVSSRRPTDLNIRLGAHNRRANLGMEQDIKVEKIIMHP 743
>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 50.0 bits (114), Expect = 5e-06
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +3
Query: 264 HALLFGGTCGGSIISPTWILTAGHCTLFTSG---RYVLAGTN-NTNDDSGVMRSVKRLVI 431
H G CGGS+I+P W+LTAGHC L R VL + +T + S + V+R++
Sbjct: 80 HVTPHGFVCGGSLIAPQWVLTAGHCILTEDPEKYRVVLGDVDRDTTEGSEQIFHVRRIIK 139
Query: 432 HPLFS 446
HP +S
Sbjct: 140 HPHYS 144
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 45.2 bits (102), Expect = 1e-04
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGR--YVLA-GTNNTNDDSGVMR--SVKRLVIHPLFS 446
CGGS+++P WI+TA HC ++ Y +A G ++ N G + V+R+++HP ++
Sbjct: 135 CGGSVVAPEWIVTAAHCFAYSKDAKDYTIAVGEHDLNATDGYEQRPDVERIILHPKYA 192
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTS--GRY-VLAG--TNNTNDDSGVMRSVKRLVIHPLFS 446
CGGS++S TW++TA HC +S +Y ++ G N N+ + +VK+++ HP ++
Sbjct: 502 CGGSLVSSTWVVTAAHCVARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQYN 559
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCT---LFTSGRYVLAGTNN 383
CGG++ISP W+LTAGHC L SG V+ GT N
Sbjct: 461 CGGTLISPDWVLTAGHCVHGQLDPSGYTVVVGTLN 495
Score = 32.7 bits (71), Expect = 0.79
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGG++IS W++TA HC
Sbjct: 872 CGGALISDRWVVTASHC 888
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 40.3 bits (90), Expect = 0.004
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCT--LFTSGRYVLAGTNNTNDDSGVMRS--VKRLVIHP 437
CGG+++ P W++TA HC L T YV G + + +G + ++R+ +HP
Sbjct: 275 CGGTLVHPRWVVTASHCVHKLTTGDLYVRMGAHWKDGKTGSEQDFRIQRIFMHP 328
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 40.3 bits (90), Expect = 0.004
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 279 GGTCGGSIISPTWILTAGHCTLFTSGRYV 365
G CGGSII P W++TAGHC + S R +
Sbjct: 7 GHWCGGSIIDPHWVVTAGHCVVPWSPRAI 35
Score = 36.3 bits (80), Expect = 0.064
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC----TLFTSGRYVLAGTNNTNDDSGVMRSVK--RLVIHPLFSV 449
CGGS+I P WILT+ HC ++ + G ++ G ++ +L IHP V
Sbjct: 275 CGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDVRKYEGFEEIIQGDKLYIHPGLVV 334
Query: 450 GPYWLDTDEFDIKQVAAK 503
G + ++D+ + K
Sbjct: 335 GDL-ISPGDYDVALIKLK 351
Score = 35.9 bits (79), Expect = 0.084
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGRYV-------LAGTNNTNDDSGVMRSVK--RLVIHPL 440
CGGS+I W++T+GHC Y+ G + + G +K +L IHP
Sbjct: 561 CGGSLIDKQWVVTSGHCFDQRPYAYIPLSYYEFRLGEHRESTTEGWEEIIKGEKLFIHPK 620
Query: 441 FSVGPYWLD-TDEFDIKQVAAK 503
+ +G LD T ++DI V K
Sbjct: 621 YKLG--GLDYTGDYDIALVKLK 640
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 40.3 bits (90), Expect = 0.004
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTS--GRYVLA--GTNNTNDDSGVMRSVKRLVIHPLFSVG 452
CG S++SP W LTA HC +S Y LA ND + V +++ H FS+G
Sbjct: 111 CGASLLSPGWALTAAHCVQRSSNPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMG 169
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +3
Query: 285 TCGGSIISPTWILTAGHC---TLFTSGRYVLAGTNNTNDDSGVMRSVK--RLVIHPLFS 446
TCGGS+IS W++TA HC G V+ G + + V +S++ +++ HP ++
Sbjct: 131 TCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKYN 189
Score = 30.3 bits (65), Expect = 4.2
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Frame = +3
Query: 285 TCGGSIISPTWILTAG---HCTLFTSGRY------VLAGTNNTNDDSGVMRSVK--RLVI 431
TCGGS+IS W++TA H GR V+ G + + V +S++ +++
Sbjct: 454 TCGGSLISDRWVVTAAQGIHRNKNPGGRQNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIE 513
Query: 432 HPLFS 446
HP ++
Sbjct: 514 HPKYN 518
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 39.9 bits (89), Expect = 0.005
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 TCGGSIISPTWILTAGHCTLFTSGRYVLAGTN--NTNDDSGVMRSVKRLVIHPLFSVGPY 458
TCG ++I P W +TA HC + V+ G++ + ++ S V+R+ H FS+ Y
Sbjct: 352 TCGATLIRPGWAITAAHCVMRPDKYTVIVGSHSRDASEPSAQNIKVRRVYRHRGFSMANY 411
Query: 459 WLDTDEFDIKQVA 497
D ++++ A
Sbjct: 412 VDDIALLELERSA 424
Score = 33.1 bits (72), Expect = 0.60
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 285 TCGGSIISPTWILTAGHC 338
+CGG++IS W++TA HC
Sbjct: 55 SCGGTLISDRWVVTASHC 72
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 39.5 bits (88), Expect = 0.007
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGRYVLAGTN-NTNDDSGVMRSVKRLVIHP 437
CGGS+I P W+LTA HC + L G + +N G + +K I P
Sbjct: 57 CGGSLIDPGWVLTAAHCLVGEQPDSALLGAHYRSNKTVGTEKDIKVAQIIP 107
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 38.3 bits (85), Expect = 0.016
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 279 GGTCGGSIISPTWILTAGHCTL 344
G CGGS+++P W+LTA HC L
Sbjct: 55 GFICGGSLVAPGWVLTAAHCIL 76
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 38.3 bits (85), Expect = 0.016
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 195 KPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILTAGHCTL 344
K K + DSR L CGGS++S TW+LTA HC +
Sbjct: 309 KTTASAKLACLQVDSRGSRSNKTATLNGHHICGGSLLSSTWVLTAAHCVI 358
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 37.9 bits (84), Expect = 0.021
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTL 344
CGGS++SP W+LTA HC +
Sbjct: 56 CGGSLLSPLWLLTAAHCVI 74
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 37.9 bits (84), Expect = 0.021
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +3
Query: 279 GGTCGGSIISPTWILTAGHCT--LFTSGRY----VLAGTNNTNDDSGVMR--SVKRLVIH 434
G CGG+++SP W++TA HC + Y + G + + G + SV R+++H
Sbjct: 374 GHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHKRSASEGTEQRFSVARIIVH 433
Query: 435 PLF 443
P +
Sbjct: 434 PQY 436
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 37.5 bits (83), Expect = 0.028
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGRYV----------LAGTNNTNDDSGVMRSVKRLVIHP 437
CGGS+IS W+LTA HC +G + L T N+ +R++ + HP
Sbjct: 133 CGGSLISEKWVLTAAHCVTHRNGNILPRSRFQVQLGLYRTTLPNEPQVQLRNISEIRTHP 192
Query: 438 LF 443
F
Sbjct: 193 QF 194
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 37.1 bits (82), Expect = 0.037
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC---TLFTSGRYVLAGTNNTNDDSGVMRS--VKRLVIHPLFSV 449
CGGS+I+ W++TA HC SG V+ G ++ ++ V + +K+L H FS+
Sbjct: 57 CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSM 115
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 37.1 bits (82), Expect = 0.037
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGG++ISP W+LTA HC
Sbjct: 574 CGGNVISPWWVLTAAHC 590
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 37.1 bits (82), Expect = 0.037
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC-TLFTSGR--YVLAGTNN--TNDDSGVMRSVKRLVIHPLFSVG 452
CGG++I+ W+LTA HC F+ V G ++ D G S+K + +HP ++
Sbjct: 1266 CGGALIAADWVLTAAHCFDRFSMPPEWTVQVGVSDMRRRDGKGQSLSIKAIFVHPQYNSS 1325
Query: 453 PYWLDTDEFDIKQVA 497
+ D ++Q A
Sbjct: 1326 SHEHDLAVLQLQQPA 1340
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 37.1 bits (82), Expect = 0.037
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +3
Query: 276 FGGT-CGGSIISPTWILTAGHCTLFTSGR---YVLAGTNNTNDDSGVMR--SVKRLVIHP 437
+GG CGG+++ P W++TA HC ++ G + G + D G + S+ R++ HP
Sbjct: 161 YGGQFCGGTLVHPQWVITAAHC-VYRRGPNDFKIRMGAHFRKGDYGTEQDFSLSRVITHP 219
Query: 438 LF 443
+
Sbjct: 220 SY 221
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 37.1 bits (82), Expect = 0.037
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I+P W+LTA HC
Sbjct: 63 CGGSLITPEWVLTAAHC 79
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 37.1 bits (82), Expect = 0.037
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I+P W+LTA HC
Sbjct: 106 CGGSLITPEWVLTAAHC 122
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 37.1 bits (82), Expect = 0.037
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGRYV---LAGTNNTNDDSGV-MR-SVKRLVIHP 437
CGG++++P W++TA HC + + + L + T+ D V MR S++ + HP
Sbjct: 657 CGGTLVTPEWVITAAHCVVDKNPASIQVRLGAQDRTSPDPSVEMRISIRSIHNHP 711
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 36.7 bits (81), Expect = 0.048
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFT--SGRYVLAGTNNTNDDSGVMRSVKRLVIHPLFSV 449
CG S+++P W LTA HC + + Y L + ++ G + + ++ H FS+
Sbjct: 266 CGASLLTPGWALTAAHCLTLSDDASDYTLVAGAHQRENDGQVFGISKIRKHKGFSM 321
>SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012)
Length = 115
Score = 36.7 bits (81), Expect = 0.048
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I+P WILTA HC
Sbjct: 37 CGGSLIAPQWILTATHC 53
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 36.3 bits (80), Expect = 0.064
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I P W+LTA HC
Sbjct: 286 CGGSLIHPEWVLTAAHC 302
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 36.3 bits (80), Expect = 0.064
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I P W+LTA HC
Sbjct: 246 CGGSLIHPEWVLTAAHC 262
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 35.9 bits (79), Expect = 0.084
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGRYV-------LAGTNNTNDDSGVMRSVK--RLVIHPL 440
CGGS+I W++T+GHC Y+ G + + G +K +L IHP
Sbjct: 276 CGGSLIDKQWVVTSGHCFDQRPYAYIPLSYYEFRLGEHRESTTEGWEEIIKGEKLFIHPK 335
Query: 441 FSVGPYWLD-TDEFDIKQVAAK 503
+ +G LD T ++DI V K
Sbjct: 336 YKLG--GLDYTGDYDIALVKLK 355
Score = 35.5 bits (78), Expect = 0.11
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I P WILT+ HC
Sbjct: 15 CGGSLIDPYWILTSSHC 31
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 35.9 bits (79), Expect = 0.084
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +3
Query: 267 ALLFGGT--CGGSIISPTWILTAGHC 338
ALL GT CGGS+++ W++TA HC
Sbjct: 70 ALLMNGTQFCGGSLVNENWVVTARHC 95
>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
Length = 386
Score = 35.9 bits (79), Expect = 0.084
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I P WILTA HC
Sbjct: 80 CGGSLIHPQWILTATHC 96
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 35.1 bits (77), Expect = 0.15
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC-----TLFTSGRYVLAGTNNTNDDSGVMRSVK--RLVIHPL 440
CGG++I+ W++TA HC + S V G ++ + G ++V+ LV+HPL
Sbjct: 749 CGGALIARDWVVTAAHCFYYDGKIVPSDILVRLGEHDRTLEEGSEQNVRASNLVLHPL 806
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 34.7 bits (76), Expect = 0.20
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 279 GGTCGGSIISPTWILTAGHC 338
G CGGSI++ WI+TA HC
Sbjct: 1806 GHICGGSIVNSQWIVTAAHC 1825
>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
Length = 687
Score = 34.3 bits (75), Expect = 0.26
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 285 TCGGSIISPTWILTAGHCTL 344
+CGG++IS W++TA HC +
Sbjct: 501 SCGGALISSKWVITAAHCVI 520
>SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 34.3 bits (75), Expect = 0.26
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +3
Query: 267 ALLFGGT---CGGSIISPTWILTAGHC 338
AL GT CGGS+I W++TA HC
Sbjct: 43 ALFLNGTHHRCGGSVIKSQWVVTAAHC 69
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 34.3 bits (75), Expect = 0.26
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC------TLFTSGRYVLAGTNNTNDDSGVM---RSVKRLVIHPL 440
C GS+I WI+TAGHC + VL G + + VKR+++HP
Sbjct: 79 CAGSLIEARWIITAGHCFKDPRSSADPDKWKVLLGERRRHSSKRHFERAQQVKRIIVHPK 138
Query: 441 FS 446
F+
Sbjct: 139 FN 140
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 34.3 bits (75), Expect = 0.26
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLF 347
CGG++I+ W+LTA HC ++
Sbjct: 1192 CGGTLIAEDWVLTAAHCVVY 1211
>SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 33.9 bits (74), Expect = 0.34
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 213 KTVVEKSDSRAVHERFP-HALLFGGTCGGSIISPTWILTAGHCTLFTSGRYV 365
K + + + A FP HA + C G+++SP W++TA C +S ++
Sbjct: 26 KRSIRRRSTVAERASFPWHAYIPELQCSGALVSPRWVVTAASCLKQSSSPFI 77
>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
Length = 348
Score = 33.5 bits (73), Expect = 0.45
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 255 RFPHALLFGGTCGGSIISPTWILTAGHC 338
RF H+ CGG++I+ W+LTA HC
Sbjct: 146 RFDHSGNQMQICGGALINREWVLTAAHC 173
>SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12)
Length = 227
Score = 33.5 bits (73), Expect = 0.45
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I W+LTA HC
Sbjct: 68 CGGSLIDSEWVLTAAHC 84
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 33.5 bits (73), Expect = 0.45
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I W+LTA HC
Sbjct: 417 CGGSLIHSNWVLTAAHC 433
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 32.3 bits (70), Expect = 1.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGGS+I+ W++TA HC
Sbjct: 460 CGGSLINREWVVTAAHC 476
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 32.3 bits (70), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTLFTSGR 359
CGGS++ WI+TA HC F S R
Sbjct: 66 CGGSLVPEDWIVTAAHC--FDSNR 87
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 31.5 bits (68), Expect = 1.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 276 FGGTCGGSIISPTWILTAGHC 338
+G CGG++++ W+LTA C
Sbjct: 280 YGPVCGGTLLTSEWVLTAARC 300
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC---TLFTSGRYVLAGTNNTNDDSGVMR-SVKRLVIHPLFSV-G 452
CGG++I W++TA HC + S + G ++ G + V + +H F G
Sbjct: 314 CGGTLIDTEWVVTAAHCVFQNIEPSNYKIKLGAHDRESSEGALTIPVTAIHMHTRFMTDG 373
Query: 453 PYWLD 467
Y D
Sbjct: 374 SYGYD 378
>SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 249
Score = 30.7 bits (66), Expect = 3.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGG++I W++TA HC
Sbjct: 73 CGGALIDREWVVTAAHC 89
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHCTL------FTSGRYVLAGTNNTNDDSGVMR-SVKRLVIHPLFS 446
CGG+++ W++TA HC + + L G N T S R + ++ +H ++
Sbjct: 240 CGGALVHEDWVVTASHCINDIRPEDYKTHIISLGGHNKTGIMSVEQRIGIAKIYLHADYN 299
Query: 447 VGPYWLDTD 473
+ P+ + D
Sbjct: 300 LYPHQYNND 308
>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 252 ERFP-HALLFGGT-CGGSIISPTWILTAGHC 338
ER+P H ++ T C G+++SP +LTA HC
Sbjct: 154 ERYPFHTVVKLSTGCTGTLVSPRHVLTAAHC 184
>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 285
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 213 KTVVEKSDSRAVHERFPHALLFGGT--CGGSIISPTWILTAGHC 338
+ VV +++A + ALLF CGG+++ W++T HC
Sbjct: 27 RRVVGGDEAKAGQFPWQIALLFKRQQYCGGALVHERWVVTGAHC 70
>SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)
Length = 679
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 126 CACAGPGANDLLQTKQKLSE 185
CACAGP A DLL +KL++
Sbjct: 279 CACAGPYAQDLLGIDEKLAK 298
>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
Length = 153
Score = 29.5 bits (63), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 288 CGGSIISPTWILTAGHC 338
CGG+++ P +++TA HC
Sbjct: 50 CGGTLVHPRFVVTASHC 66
>SB_56353| Best HMM Match : I-set (HMM E-Value=6.3e-15)
Length = 157
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +3
Query: 282 GTCGGSIISPTWILTAGHCTLFTSGRYVLAGTNNTNDDSGVMRSVKRLVIHPLFSVGPYW 461
GT +LT + T +G Y G+N + D ++ I P S+ P +
Sbjct: 18 GTLPSGATDKDGVLTIPYATRIHTGIYTCTGSNQYSYDQNSVQLRVAAPIEPQVSILPRF 77
Query: 462 LDTDEFDIKQ 491
+ DE ++ Q
Sbjct: 78 MTVDEGEVVQ 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,168,714
Number of Sequences: 59808
Number of extensions: 580309
Number of successful extensions: 1289
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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