Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B07_e50_03.seq
         (1508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    37   0.043
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    31   1.6  
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    31   2.8  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   6.5  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    29   8.6  
AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical...    29   8.6  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 36.7 bits (81), Expect = 0.043
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 288 CGGSIISPTWILTAGHCTLFTSGRYVLA---GTNNTNDDSGVMRSVKRLVIHPLFSVG 452
           CGGS+I P ++LTA HC  F   R   +           SG    V  + IHP +++G
Sbjct: 84  CGGSLIDPNFVLTAAHC--FAKDRRPTSYSVRVGGHRSGSGSPHRVTAVSIHPWYNIG 139


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 279 GGTCGGSIISPTWILTAGHCTLFTSGR-YVLAGTNNTNDDSGVMRSVKRLVIH 434
           G  CG ++I   W++TA HC L    R +V       N +     SVK   IH
Sbjct: 63  GILCGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERSF--SVKEAYIH 113


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 291 GGSIISPTWILTAGHCTLFTSG-RYVLAGTNN-TNDDSGVMRSVKRL 425
           GGSIISP  I+TA H  + T G R  L    N    +S + RS+K L
Sbjct: 43  GGSIISPYHIITAAHGFITTIGSRGNLCENKNWKKPNSSIYRSIKFL 89


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 288 CGGSIISPTWILTAGHC---TLFTSGRYVLAG--TNNTNDDSGVMRSVKRLVIHPLF 443
           CG SI+  T ++TA HC       S   V+ G   NN  D +  +  ++R+  +PL+
Sbjct: 54  CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY 110


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 243 AVHERFPHALLFGGTCGGSIISPTWILTAGHC 338
           +V  RFP        CGG +I+P+ ++T+ HC
Sbjct: 33  SVITRFPDGTT--NVCGGVLIAPSIVITSAHC 62


>AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical
           protein Y39B6A.16 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -2

Query: 316 QVGLMIDPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAPGP 137
           Q+     PPQ PP+SN+    S  +LE+     VF  +     +     F   ++ A   
Sbjct: 151 QLAEQAPPPQTPPRSNSLKVASSRSLETPSMMRVFSDSMYETPVQIQRRFTKAQAKAEAE 210

Query: 136 AHAHAMS-ATATETVNC 89
           A A A S  +  +T  C
Sbjct: 211 AEAPAKSPGSKAQTTKC 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,009,820
Number of Sequences: 27780
Number of extensions: 413947
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)