Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B07_e50_03.seq
         (1508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   1e-05
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   6.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   6.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   9.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
 Frame = +3

Query: 279 GGTCGGSIISPTWILTAGHCTL--FTSGRYVLAG----TNNTNDDSGVMRSVKRLVIHPL 440
           G  CG +IIS  ++LTA HC +   T+   ++ G    ++ T  ++ V+ S+ +++IHP 
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244

Query: 441 FSVGPYWLDTDEFDIKQVA 497
           + +    ++ D++ I  +A
Sbjct: 245 YDI----IEKDDWQINDIA 259


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 419 FH*THNTTVVVCIVGAC*HIPAA--GEQCTVTSCEYP 315
           F  T+ T+VVV   G+C ++P    G  C +    +P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFP 119


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 LLFGGTCGGSIISPTWILTA-GHCTLFTSGRYVL 368
           +L G TC GS I   W+  A     +F+ G ++L
Sbjct: 575 VLAGATCLGSSIKAMWLRRALASLMVFSLGLFLL 608


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 650 YAQSDARNGTKRPSSNEVCFHFXTI 724
           Y Q  ++N T+RP++NEV     T+
Sbjct: 289 YKQMWSQNITERPTTNEVITKIDTL 313


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 302 DRPATGASEKQCVRESLMHCSRVRLLYDCFLFH 204
           D+ A    E +CV    ++CSR  L+   + +H
Sbjct: 27  DKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,723
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52754625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)