Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B06_e42_04.seq
(1469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 172 5e-43
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 171 2e-42
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 1e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 4.0
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 5.3
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 7.0
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 29 7.0
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 172 bits (419), Expect = 5e-43
Identities = 81/158 (51%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Frame = +2
Query: 122 NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 298
N +LK++L++LYI A ++++ N+K+++I+VP KAF+KI +RLVRELEKKFSGK V
Sbjct: 34 NQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDV 93
Query: 299 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQ 478
V V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG++
Sbjct: 94 VIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAK 149
Query: 479 LIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 150 VIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 171 bits (415), Expect = 2e-42
Identities = 82/158 (51%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Frame = +2
Query: 122 NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 298
N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVRELEKKFSGK V
Sbjct: 47 NQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDV 106
Query: 299 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQ 478
V V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +
Sbjct: 107 VLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRK 162
Query: 479 LIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 163 IMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 1e-13
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = +2
Query: 152 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 331
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 332 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 445
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 4.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 366 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 250
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 422 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 529
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 7.0
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 371 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 487
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 29.5 bits (63), Expect = 7.0
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = -3
Query: 558 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 379
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 378 ERGLFCLLATRVLWLGLG 325
GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,157,349
Number of Sequences: 37544
Number of extensions: 658992
Number of successful extensions: 1221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4687251632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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