Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B06_e42_04.seq
         (1469 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7...   277   8e-76
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   5.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   5.5  

>L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7
           protein.
          Length = 192

 Score =  277 bits (678), Expect = 8e-76
 Identities = 131/161 (81%), Positives = 146/161 (90%)
 Frame = +2

Query: 122 NSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVV 301
           NSDLK QLR+LYIT+A+E+E +NKK+IIIYVP+PK KAFQK+Q RLVRELEKKFSGKHVV
Sbjct: 32  NSDLKPQLRDLYITRAREVEFNNKKAIIIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVV 91

Query: 302 FVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQL 481
           F+ +R+ILPKP    R  NKQKRPRS  +T+VYDAILEDLVFPAE+VGKRIRVKLDGSQL
Sbjct: 92  FIAERRILPKPMRGRRDPNKQKRPRSPNVTAVYDAILEDLVFPAEVVGKRIRVKLDGSQL 151

Query: 482 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEPYL 604
           IKVHLDKNQQTTIEHKVDTF SVYKKLTGR+VTFEFPE YL
Sbjct: 152 IKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFPENYL 192


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 386 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 556
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 88


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 386 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 556
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 35  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 88


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,851
Number of Sequences: 2352
Number of extensions: 22360
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 171498690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)