Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B06_e42_04.seq
(1469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 174 1e-43
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 174 1e-43
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 174 1e-43
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 172 6e-43
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 172 6e-43
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 3.3
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p... 30 3.3
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 174 bits (423), Expect = 1e-43
Identities = 84/159 (52%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 295
TN +LK++L++LYI +A +++ N+K+++IYVP KAF+KI RLVRELEKKFSGK
Sbjct: 33 TNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKD 92
Query: 296 VVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 475
V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS
Sbjct: 93 VIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGS 148
Query: 476 QLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 149 KIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 174 bits (423), Expect = 1e-43
Identities = 82/159 (51%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 295
TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +RLVRELEKKFSGK
Sbjct: 33 TNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKD 92
Query: 296 VVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 475
V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGT 148
Query: 476 QLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 174 bits (423), Expect = 1e-43
Identities = 82/159 (51%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 295
TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +RLVRELEKKFSGK
Sbjct: 33 TNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKD 92
Query: 296 VVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 475
V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG+
Sbjct: 93 VIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGT 148
Query: 476 QLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 172 bits (418), Expect = 6e-43
Identities = 82/159 (51%), Positives = 121/159 (76%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 295
TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVRELEKKFSGK
Sbjct: 33 TNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKD 92
Query: 296 VVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 475
V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG+
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGT 148
Query: 476 QLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 149 KIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 172 bits (418), Expect = 6e-43
Identities = 82/159 (51%), Positives = 121/159 (76%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 295
TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVRELEKKFSGK
Sbjct: 33 TNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKD 92
Query: 296 VVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 475
V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG+
Sbjct: 93 VILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGT 148
Query: 476 QLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 592
+++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 149 KIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 443 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 351
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 580
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 139 SLQVRVSLKFKQEPARSKSRRCQGSXSTRFEDFRTHPSXRIPA 11
+L V + L P +SRRCQG TRF + S +P+
Sbjct: 367 NLFVTIGLGLNNCPKNFRSRRCQGPNGTRFTASMNNVSFALPS 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,080,628
Number of Sequences: 28952
Number of extensions: 482298
Number of successful extensions: 984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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