Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B04_e26_04.seq
         (1509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    58   2e-08
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    53   5e-07
03_01_0436 + 3384526-3385236,3387857-3388720                           30   4.1  
03_02_0686 + 10407800-10409501,10409611-10410284                       29   9.6  

>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = +1

Query: 97  PVVVHCSAGVGRSGTFITLDTALHR-LAAHADTLDVFGMVYAMRRERVWMVQTEQQYICV 273
           P+VVHCSAG+GR+G +IT+ + + R L     +  +   V  +R +RV MVQTE+QY+  
Sbjct: 253 PIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRTQRVGMVQTEKQYMFC 312

Query: 274 HQCLVAVLE 300
           ++ +   L+
Sbjct: 313 YRAIADELK 321


>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 53.2 bits (122), Expect = 5e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 97  PVVVHCSAGVGRSGTFITLDTALHR-LAAHADTLDVFGMVYAMRRERVWMVQTEQQYI 267
           P+V HCSAG+GR+G +IT+   + R L      LD+   V   R +R  MVQTE+Q +
Sbjct: 314 PIVAHCSAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEEQSV 371


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 100 VVVHCSAGVGRSGTFITLDTALHRLAAHADT 192
           VV H  +G+G S   I +D A H L  HA+T
Sbjct: 212 VVTHNLSGMGCSAGIIAIDLAKHLLQVHAET 242


>03_02_0686 + 10407800-10409501,10409611-10410284
          Length = 791

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 512 ARGSVCLLYNLFVXRE*LFWRTERGARSARSPATHMPDSAMPSSSSKAG 366
           A G +CLL+ L      LFWR ++  + + SP     D+   +++ K+G
Sbjct: 401 AVGGICLLFLLLFCCVLLFWRKDK--QESESPKKGAKDATAKAAAGKSG 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,149
Number of Sequences: 37544
Number of extensions: 250749
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)