Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B04_e26_04.seq
         (1509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...    60   3e-09
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa...    29   6.0  
At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    29   8.0  

>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 97  PVVVHCSAGVGRSGTFITLDTALHR-LAAHADTLDVFGMVYAMRRERVWMVQTEQQYICV 273
           P++VHCSAG+GR+GT+  +   + R LA     LD+   V   R++R+ MVQT  QY   
Sbjct: 260 PIIVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLAKTVALFRKQRIGMVQTMDQYFFC 319

Query: 274 HQCLVAVLE 300
           +  +V  LE
Sbjct: 320 YNAIVDELE 328


>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 407

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 173 SPRTPTPSTCSAWCTRCAASASGW 244
           +P T TP T S WC  C    S W
Sbjct: 7   TPTTTTPITASYWCYSCTRFVSVW 30


>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 100 VVVHCSAGVGRSGTFITLDTALHRLAAHADTLDVFGMVY 216
           +V+ CS+GV   G  ++L+  L+ +A+H     +F +VY
Sbjct: 178 LVMSCSSGVTLFGASVSLNGILYWVASHLKNNSLFVLVY 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,474
Number of Sequences: 28952
Number of extensions: 181528
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)