Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B03_e18_03.seq
         (1520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   5.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   7.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 199 NSWQLXYCPLYPSQVFSRPQPS 134
           N W L   P  P Q+ ++P PS
Sbjct: 322 NCWSLTSSPPPPYQISAQPTPS 343


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 599 KSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXIC 715
           K  +E +  R F + NGK V   F      ++ KQ  IC
Sbjct: 266 KVAKEDIQVRFFEEKNGKVVWEGFGDFQPSQVHKQTAIC 304


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 419 KLAFVIRIRGVNQVSPKVRKVLQL 490
           KL FV+R+ G+  +   +RK ++L
Sbjct: 359 KLWFVLRLYGIENLQAFIRKHVEL 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,065
Number of Sequences: 336
Number of extensions: 4056
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45681550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)