Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B03_e18_03.seq
(1520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 204 3e-53
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 203 4e-53
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 197 3e-51
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 2.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 5.2
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 27 6.8
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 204 bits (498), Expect = 3e-53
Identities = 98/199 (49%), Positives = 131/199 (65%)
Frame = +2
Query: 200 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 379
PES+ ++++A KKR+ I KRAE Y EYR ER++I L R+
Sbjct: 17 PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRK 76
Query: 380 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 559
AR GNYYVP E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NKAT ML+
Sbjct: 77 ARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQ 136
Query: 560 IAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPLR 739
+ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N++IE L K + + +EDLI
Sbjct: 137 VVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIH-E 195
Query: 740 YFTXGEKFKYXSYFLWAXQ 796
+T G FK + F+W Q
Sbjct: 196 IYTVGPNFKQAANFIWPFQ 214
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 203 bits (496), Expect = 4e-53
Identities = 97/196 (49%), Positives = 130/196 (66%)
Frame = +2
Query: 200 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 379
PES+ +++SA KKR+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 380 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 559
AR GNY+VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 560 IAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPLR 739
+ EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE L K + + VEDLI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIH-E 194
Query: 740 YFTXGEKFKYXSYFLW 787
+T G FK + FLW
Sbjct: 195 IYTVGPNFKQAANFLW 210
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 197 bits (481), Expect = 3e-51
Identities = 93/174 (53%), Positives = 123/174 (70%)
Frame = +2
Query: 266 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 445
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 446 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 625
GV + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+YK
Sbjct: 97 GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156
Query: 626 RGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPLRYFTXGEKFKYXSYFLW 787
RGF K+NG+R+ ++ N+LIE+ L K + I +ED+I + G FK + FLW
Sbjct: 157 RGFGKINGQRIALSDNALIEEALGKYDVISIEDIIH-EIYNVGSHFKEVTKFLW 209
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 284 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 397
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 380 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 499
+ N+G YY G +AFV I GV + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 160 VKGKEDSXEVASCSGISLEAP*KEGGTPSSPSS 258
++G+EDS SGI EA G P PSS
Sbjct: 109 LEGEEDSSSPLEISGIDFEAGSYPGEAPLPPSS 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,232,758
Number of Sequences: 5004
Number of extensions: 70325
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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