Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B03_e18_03.seq
(1520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 217 2e-56
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 209 5e-54
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 122 1e-27
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 1.8
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 29 7.3
08_02_0222 + 14446967-14448310 29 9.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 217 bits (530), Expect = 2e-56
Identities = 109/236 (46%), Positives = 149/236 (63%)
Frame = +2
Query: 179 VXKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 358
V K VPESV + L + +++ RK IF RA+QY +EY +E++
Sbjct: 5 VAKAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKE 64
Query: 359 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 538
++L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NK
Sbjct: 65 LVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNK 124
Query: 539 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICV 718
AT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ N +IE+ L K + IC+
Sbjct: 125 ATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICI 184
Query: 719 EDLIPLRYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
EDL+ T G FK + FLW + + L G + K G G E +N
Sbjct: 185 EDLVH-EIMTVGPHFKEANNFLWPFKL-KAPLGGLKKKRNHYVEGGDAGNREDYIN 238
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 209 bits (510), Expect = 5e-54
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKR------LSKQNXICV 718
R EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T N +IE+ L K + IC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 719 EDLIPLRYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
EDL+ T G FK + FLW + + L G + K G G E +N
Sbjct: 190 EDLVH-EIMTVGPHFKEANNFLWPFKL-KAPLGGLKKKRNHYVEGGDAGNRENYIN 243
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 122 bits (293), Expect = 1e-27
Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Frame = +2
Query: 269 KRRSASIKKRKE----IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLA 427
+R++A ++R++ KR E +V+E+R KE D +R+ + + R P E +KL
Sbjct: 32 ERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLV 89
Query: 428 FVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 607
F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V
Sbjct: 90 FAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149
Query: 608 RELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPLRYFTXGEKFKYXSYFL 784
++L+YK+G L+ + P+T N LIEK L + IC+EDL+ + G F+ S FL
Sbjct: 150 KDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVH-EIASVGPHFREASNFL 207
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 451 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 296
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 29.5 bits (63), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 219 CFKTDSGTAGNFXTVLFTLHRFFLGRSLLFC 127
CF+T++G AG L+ +H+F +FC
Sbjct: 368 CFRTEAGAAGAATRGLYRVHQFSKVEMFVFC 398
>08_02_0222 + 14446967-14448310
Length = 447
Score = 29.1 bits (62), Expect = 9.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 135 EGCGRE-KTCEG*RGQXXSCQLFRNQS*STVKGGRHSELAVFRSH 266
+G GR+ +TC+G RG+ + +L R + GG E VF H
Sbjct: 74 DGEGRQARTCDGGRGRWITQRLERTGNLRLAGGGGSGEAVVFEKH 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,412,130
Number of Sequences: 37544
Number of extensions: 521939
Number of successful extensions: 1061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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