Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B03_e18_03.seq
         (1520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      260   2e-69
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)                          30   5.6  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.8  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  260 bits (637), Expect = 2e-69
 Identities = 132/234 (56%), Positives = 160/234 (68%)
 Frame = +2

Query: 185 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 364
           K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE DE+
Sbjct: 7   KVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKEVDEL 66

Query: 365 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 544
           R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRLNKAT
Sbjct: 67  RMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRLNKAT 126

Query: 545 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVED 724
            NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K   ICVED
Sbjct: 127 ANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVED 186

Query: 725 LIPLRYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
           LI    FT GE FK  S FLW  +    +  G R KT      G  G  E K+N
Sbjct: 187 LIH-EIFTVGEHFKEASNFLWPFKLSSPK-GGFRKKTTHFVEGGDHGNREDKIN 238


>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
          Length = 327

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 187 LXYCPLYPSQVFSRPQPSFL*SQPSCCGIKLPRGTCASCRIXCSP 53
           + YCP Y    F+      + S P   G+  P G C +C +   P
Sbjct: 5   VAYCPFYVKSNFTETYNLDVISVPYDDGVPFPGGCCLTCNMDVDP 49


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 656 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 510
           HA   V   R   P   +S  + +P Q  ++RY A S  PC  ER   C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,958,826
Number of Sequences: 59808
Number of extensions: 571541
Number of successful extensions: 1341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)