Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B03_e18_03.seq
         (1520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   224   1e-58

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  224 bits (547), Expect = 1e-58
 Identities = 110/234 (47%), Positives = 153/234 (65%)
 Frame = +2

Query: 185 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 364
           K+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++ +
Sbjct: 6   KVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGL 65

Query: 365 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 544
           RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT
Sbjct: 66  RLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKAT 125

Query: 545 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVED 724
           + +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K N IC+ED
Sbjct: 126 LPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185

Query: 725 LIPLRYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
           L      T G  FK  + FLW  +       G   KT      G FG  E ++N
Sbjct: 186 LAH-EIATVGPHFKEATNFLWPFKLNNP-TGGWTKKTNHFVEGGDFGNREDQIN 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,342,957
Number of Sequences: 27780
Number of extensions: 429286
Number of successful extensions: 1065
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)