Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B03_e18_03.seq
(1520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 217 2e-56
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 217 2e-56
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 214 1e-55
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 214 1e-55
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 214 1e-55
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 210 2e-54
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 121 1e-27
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 2.6
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 6.1
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 8.1
At3g52860.1 68416.m05825 expressed protein 29 8.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 217 bits (530), Expect = 2e-56
Identities = 111/230 (48%), Positives = 145/230 (63%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K ICVEDLI
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIH- 191
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 192 EIMTVGPHFKEANNFLWPFQL-KAPLGGLKKKRNHYVEGGDAGNRENFIN 240
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 217 bits (530), Expect = 2e-56
Identities = 111/230 (48%), Positives = 145/230 (63%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K ICVEDLI
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIH- 186
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 187 EIMTVGPHFKEANNFLWPFQL-KAPLGGLKKKRNHYVEGGDAGNRENFIN 235
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 214 bits (522), Expect = 1e-55
Identities = 111/230 (48%), Positives = 145/230 (63%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV Q + + +KRK IF RA+QY KEY+ KER+ I+L R
Sbjct: 10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K ICVEDLI
Sbjct: 130 RRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIH- 188
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 189 EIMTVGPHFKEANNFLWPFQL-KAPLGGMKKKRNHYVEGGDAGNRENFIN 237
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 214 bits (522), Expect = 1e-55
Identities = 111/230 (48%), Positives = 145/230 (63%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV Q + + +KRK IF RA+QY KEY+ KER+ I+L R
Sbjct: 10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K ICVEDLI
Sbjct: 130 RRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIH- 188
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 189 EIMTVGPHFKEANNFLWPFQL-KAPLGGMKKKRNHYVEGGDAGNRENFIN 237
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 214 bits (522), Expect = 1e-55
Identities = 111/230 (48%), Positives = 145/230 (63%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV Q + + +KRK IF RA+QY KEY+ KER+ I+L R
Sbjct: 10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K ICVEDLI
Sbjct: 130 RRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIH- 188
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 189 EIMTVGPHFKEANNFLWPFQL-KAPLGGMKKKRNHYVEGGDAGNRENFIN 237
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 210 bits (513), Expect = 2e-54
Identities = 109/230 (47%), Positives = 143/230 (62%)
Frame = +2
Query: 197 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 376
VPESV Q + + + RK IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 377 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 556
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 557 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITFNSLIEKRLSKQNXICVEDLIPL 736
R EPY+ +G+PNLKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IC EDLI
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIH- 186
Query: 737 RYFTXGEKFKYXSYFLWAXQTEQTRLEGXRXKTIPTXXXGXFGXXEXKVN 886
T G FK + FLW Q + L G + K G G E +N
Sbjct: 187 EILTVGPHFKEANNFLWPFQL-KAPLGGLKKKRNHYVEGGDAGNRENFIN 235
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 121 bits (292), Expect = 1e-27
Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 2/201 (0%)
Frame = +2
Query: 290 KKRKEI--FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVS 463
KK+K++ KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N +
Sbjct: 41 KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMH 100
Query: 464 PKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKL 643
PK +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+YK+G +
Sbjct: 101 PKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTII 160
Query: 644 NGKRVPITFNSLIEKRLSKQNXICVEDLIPLRYFTXGEKFKYXSYFLWAXQTEQTRLEGX 823
G VP+T N++IE+ L + + +EDL+ G+ F+ FL + + +
Sbjct: 161 EGNPVPLTDNNIIEQALGEHKILGIEDLVN-EIARVGDHFREVMRFLGPLKLNKPVADVL 219
Query: 824 RXKTIPTXXXGXFGXXEXKVN 886
K G G E K+N
Sbjct: 220 HRKKQVFSEGGDTGNREDKIN 240
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 355 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 251
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 465 GDTWLTPRIRMTNASLASPGT 403
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -3
Query: 756 SPXVKYLNGMRSSTQXMFCLLSLFSMSELKVIGTRFPFSLA 634
+P +K L SS+ +FC+ S+F++S + RF FSL+
Sbjct: 7 TPSLKLLAMTNSSSSTLFCIPSIFNISSSE--SHRFNFSLS 45
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 266 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 364
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,166,368
Number of Sequences: 28952
Number of extensions: 396355
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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