Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B02_e10_04.seq
         (1509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...   200   4e-52
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...   117   4e-27
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    49   2e-06
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    36   0.011
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    32   0.24 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    29   1.3  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   5.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   6.7  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score =  200 bits (488), Expect = 4e-52
 Identities = 84/153 (54%), Positives = 115/153 (75%)
 Frame = +2

Query: 284 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLL 463
           + +++++R+D+++++  +   PW+ DP FF+ +KISA+ALLKM+ H   G  LEVMG + 
Sbjct: 3   NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62

Query: 464 GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPG 643
           GKV+  ++I++DSFALPVEGTETRVNA  +A EY   Y    K V RHEN IGWYHSHP 
Sbjct: 63  GKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPN 122

Query: 644 YGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRT 742
           YGCWLSG+DV TQ  NQ +Q+PFVA+V+DP R+
Sbjct: 123 YGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRS 155



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +3

Query: 759 VCLGAFRTYP-----XVTNPANEXPX*IFKRFPLXXXEISAVHWQQXXSLEV 899
           V +GAFRTYP      +   +   P  +FK  P    E +  H +   SL +
Sbjct: 161 VNIGAFRTYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPI 212


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score =  117 bits (282), Expect = 4e-27
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
 Frame = +2

Query: 380 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 556
           + IS+LALLKM+ H R G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89

Query: 557 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 736
           ++     ++  KQ GR E  +GWYHSHPG+GCWLS +D++TQ   +      VA+V+DP+
Sbjct: 90  FQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPI 147

Query: 737 RT 742
           ++
Sbjct: 148 QS 149


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +2

Query: 374 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 544
           + + +  L LL  V  + RS  G    V+G+LLG+ + + + V +S+A+P E  E   + 
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 545 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 640
               + +M +  E  K++  +E  +GWYH+ P
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHTGP 106


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +2

Query: 440 LEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA--QAQAYEYMTAYIEAAKQVGRHEN 613
           LE  G+L GK+  N   +        E T        +A  +E+   +         +  
Sbjct: 285 LETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKH---------NLL 335

Query: 614 AIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
            +GW H+HP   C++S +D+ T    Q      +AIV+ P
Sbjct: 336 TLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAP 375


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -3

Query: 685 HL-CRDIYTRKPTSVPRVTVIPTNGILMTAHLFCCF-NICCHIFVSLSLCIDTSFSTFYR 512
           HL C+ I     TS    T +  NG  + + +F  F ++    F    +   TSFS    
Sbjct: 352 HLACKKIPFYDVTSHHYTTPLNPNGYKLESFIFDLFPSVSVENFGCFQVPRRTSFSPLKN 411

Query: 511 ESKRVHNNHSVCVN 470
            SK  ++NH  CVN
Sbjct: 412 SSKSPNDNHETCVN 425


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 569 TAYIEAAKQVGRHENAIGWYHSHPG-YGCWLSGIDVSTQMLNQNFQEPFVAIVID 730
           T  +E   Q+G HE   G Y  + G +  +  G+D++T+        P +++ ID
Sbjct: 54  TRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDID 108


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 408 FKSARAEILISLKKCGSFSHGFAARISCCCFLSY 307
           FK A A+ +I L+   S+SH F    + CC L +
Sbjct: 344 FKQA-ADAIIELEDLNSWSHAFYRYFAGCCLLQH 376


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +2

Query: 653  WLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXWKSLPWCXQNISXG 793
            WL  +D S Q L Q FQ P V   +D        K    C Q    G
Sbjct: 1239 WLRFVDESPQTLFQTFQNP-VVHYLDEAEASSSLKEEQLCRQEFCYG 1284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,442,372
Number of Sequences: 5004
Number of extensions: 80098
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)