Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B02_e10_04.seq
(1509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 241 1e-63
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 125 1e-28
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 125 1e-28
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 42 0.002
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 41 0.003
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 39 0.012
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.012
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 33 0.45
08_01_0495 - 4309816-4310592 30 4.1
>04_04_1418 + 33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 241 bits (590), Expect = 1e-63
Identities = 137/288 (47%), Positives = 164/288 (56%), Gaps = 29/288 (10%)
Frame = +2
Query: 239 IAQKTWVMANNMEIVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 406
+A++TW + NN+ ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 407 KMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEA 586
KMV+HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA AYEYM Y
Sbjct: 61 KMVVHARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYMVEYSTI 120
Query: 587 AKQVGRH-------------------------ENAIGWYHSHPGYGCWLSGIDVSTQMLN 691
KQ+G H EN +GWYHSHPGYGCWLSGIDVSTQMLN
Sbjct: 121 NKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLN 180
Query: 692 QNFQEPFVAIVIDPVRTXFXWKSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGX 871
Q FQEPF+A+VIDP RT K + YKP QTIPL K +FG
Sbjct: 181 QQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPKDYKPP-DEPVSEYQTIPLNKIEDFGVH 239
Query: 872 LATXXFP*SXXFKTPLXXGXTGXHLGXKXWXNTLXRLNLDPNPDYPTG 1015
FK+ L L K W NTL L N DY G
Sbjct: 240 CKQYYALDITYFKSSLDSHLLDL-LWNKYWVNTLSSSPLLGNRDYVAG 286
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 125 bits (301), Expect = 1e-28
Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +2
Query: 374 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 550
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 730
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 731 PVRT 742
P+++
Sbjct: 145 PIQS 148
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 125 bits (301), Expect = 1e-28
Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +2
Query: 374 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 550
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 730
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 731 PVRT 742
P+++
Sbjct: 145 PIQS 148
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 620 GWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVI---DPVRTXF 748
GW H+HP C+LS ID+ TQ Q VAIVI DP R F
Sbjct: 429 GWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVF 474
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 40.7 bits (91), Expect = 0.003
Identities = 28/121 (23%), Positives = 50/121 (41%)
Frame = +2
Query: 380 IKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAY 559
+ ++ + V A + LE G+L G + T V + +P + + + ++ +
Sbjct: 362 VPVTLMECFLRVAEANTANNLETCGILAGTLKKRTFYVT-TLIIPKQRSTSDSHSTQKCQ 420
Query: 560 EYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVR 739
I + G +GW H+HP C+LS ID+ Q +AIV+ P
Sbjct: 421 ATNEEEIFEVQDKGSLFT-LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTD 479
Query: 740 T 742
T
Sbjct: 480 T 480
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 38.7 bits (86), Expect = 0.012
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +2
Query: 437 TLEVMGLLLG--KVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHE 610
+LE G++ G +VD + + + + + T + +A E + ++ +Q+G
Sbjct: 296 SLETCGIIAGTLRVDMDVKYFIATDLIIPKQESTSYSREATNEEEI---LDIFEQLGSPS 352
Query: 611 NAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
+ +GW H+HP C++S +D+ NQ AIV+ P
Sbjct: 353 H-LGWIHTHPTQECFMSSVDLHNHYSNQKDLREAFAIVVAP 392
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.012
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 386 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 514
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
Score = 29.1 bits (62), Expect = 9.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 608 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRT 742
E +GWY S+PG+ S D + + + +DPV++
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKS 207
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 33.5 bits (73), Expect = 0.45
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 617 IGWYHSHPGYGCWLSGIDVSTQMLNQN 697
+GW H+HP C+LS ID+ QN
Sbjct: 387 LGWIHTHPTQSCFLSSIDLHNHYSYQN 413
>08_01_0495 - 4309816-4310592
Length = 258
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 322 TTRYPCCEAMGERSTFFQRYQNLGSRTFENG 414
TTR+ C +A G++ F QR++ L RTF G
Sbjct: 23 TTRHGCLQASGDQQDFSQRFR-LARRTFHLG 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,928,277
Number of Sequences: 37544
Number of extensions: 543225
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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