Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B02_e10_04.seq
         (1509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...   269   4e-72
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...   128   8e-30
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...   122   5e-28
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    39   0.008
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    33   0.53 
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    31   2.8  
U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical pr...    30   4.9  
AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical ...    29   8.6  

>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
            subunit protein 5 protein.
          Length = 368

 Score =  269 bits (659), Expect = 4e-72
 Identities = 137/258 (53%), Positives = 164/258 (63%)
 Frame = +2

Query: 233  SNIAQKTWVMANNMEIVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 412
            S++ Q+ W   NN   V NVD I+ Y+ KQQ +I  AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10   SSVPQRNWEKENN---VQNVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66

Query: 413  VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 592
             MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E   
Sbjct: 67   TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126

Query: 593  QVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXWKSLPWC 772
              GR E  +GWYHSHPGYGCWLSGIDVSTQ LNQ FQEP+VAIVIDP+RT    K     
Sbjct: 127  TEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGA 186

Query: 773  XQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXTGXHLGX 952
             +    GY+P         Q+IPL K  +FG             FK+ L        L  
Sbjct: 187  FRTYPEGYRPP-DDVPSEYQSIPLAKIEDFGVHCKRYYSLDVSFFKSQLDAHIL-TSLWN 244

Query: 953  KXWXNTLXRLNLDPNPDY 1006
              W +TL    L  N ++
Sbjct: 245  SYWISTLSSSPLFSNVEF 262


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score =  128 bits (310), Expect = 8e-30
 Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
 Frame = +2

Query: 362 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 538
           P   + + IS+LALLKM+ HARSG  LEVMGL+LG  VD  T+ V D FA+P  GT   V
Sbjct: 23  PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82

Query: 539 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVA 718
            +    Y+  T +++  K VGR EN +GWYHSHPG+GCWLS +DV+TQ   +      VA
Sbjct: 83  ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140

Query: 719 IVIDPVRT 742
           +V+DP+++
Sbjct: 141 VVVDPIQS 148


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score =  122 bits (295), Expect = 5e-28
 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
 Frame = +2

Query: 380 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 556
           + IS+LALLKM+ H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 33  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92

Query: 557 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 736
           ++     ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP+
Sbjct: 93  FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150

Query: 737 RT 742
           ++
Sbjct: 151 QS 152


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +2

Query: 380 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 544
           + +  L LL +V H    +++     V+G+LLG +  + T+ + +SFA+P +  +   + 
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 545 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 640
                +Y+ +      +V   E  +GWYH+ P
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 33.1 bits (72), Expect = 0.53
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 422 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 601
           A++ G  + MG L+G  +  ++ V + FA+P   +   +    Q  + M   I A K+  
Sbjct: 29  AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85

Query: 602 RHENAIGWY 628
            +E  +GW+
Sbjct: 86  PNEQPVGWF 94


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -3

Query: 637 VTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHSV 479
           +  +P +GIL  + L   +    +++  ++  + T+F  F+R+S +VH N SV
Sbjct: 169 IITMPLSGILCESSLG--WRSIYYLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219


>U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical
           protein T19D12.9 protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 646 VPRVTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHS 482
           +  + ++P +G+L  + L   +    ++F  +S+     F TF+R+S  VH N S
Sbjct: 171 ISSIILMPVSGVLCESQLG--WRYIFYLFGGISVIAHIIFFTFFRDSATVHRNVS 223


>AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical
           protein T28C12.6 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 116 NANRSFNHFRSFKKSTK*Y*PFYFN*FNSTMASTSADS 229
           N N  FN FRS+        P   N F+S M STS +S
Sbjct: 167 NVNPQFNVFRSYSNDLVGSLPLCRNYFHSCMTSTSCES 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,417,653
Number of Sequences: 27780
Number of extensions: 473484
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)