BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_B02_e10_04.seq (1509 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 269 4e-72 U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 128 8e-30 AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 122 5e-28 AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 39 0.008 Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.53 U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 31 2.8 U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 30 4.9 AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical ... 29 8.6 >U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome subunit protein 5 protein. Length = 368 Score = 269 bits (659), Expect = 4e-72 Identities = 137/258 (53%), Positives = 164/258 (63%) Frame = +2 Query: 233 SNIAQKTWVMANNMEIVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 412 S++ Q+ W NN V NVD I+ Y+ KQQ +I AKPW+KDPH+FK IKISA+ALLKM Sbjct: 10 SSVPQRNWEKENN---VQNVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66 Query: 413 VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 592 MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E Sbjct: 67 TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126 Query: 593 QVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXWKSLPWC 772 GR E +GWYHSHPGYGCWLSGIDVSTQ LNQ FQEP+VAIVIDP+RT K Sbjct: 127 TEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGA 186 Query: 773 XQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXTGXHLGX 952 + GY+P Q+IPL K +FG FK+ L L Sbjct: 187 FRTYPEGYRPP-DDVPSEYQSIPLAKIEDFGVHCKRYYSLDVSFFKSQLDAHIL-TSLWN 244 Query: 953 KXWXNTLXRLNLDPNPDY 1006 W +TL L N ++ Sbjct: 245 SYWISTLSSSPLFSNVEF 262 >U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical protein F37A4.5 protein. Length = 319 Score = 128 bits (310), Expect = 8e-30 Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 1/128 (0%) Frame = +2 Query: 362 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 538 P + + IS+LALLKM+ HARSG LEVMGL+LG VD T+ V D FA+P GT V Sbjct: 23 PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82 Query: 539 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVA 718 + Y+ T +++ K VGR EN +GWYHSHPG+GCWLS +DV+TQ + VA Sbjct: 83 ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140 Query: 719 IVIDPVRT 742 +V+DP+++ Sbjct: 141 VVVDPIQS 148 >AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 11 protein. Length = 312 Score = 122 bits (295), Expect = 5e-28 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 1/122 (0%) Frame = +2 Query: 380 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 556 + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92 Query: 557 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 736 ++ ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VA+V+DP+ Sbjct: 93 FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150 Query: 737 RT 742 ++ Sbjct: 151 QS 152 >AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 8 protein. Length = 362 Score = 39.1 bits (87), Expect = 0.008 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Frame = +2 Query: 380 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 544 + + L LL +V H +++ V+G+LLG + + T+ + +SFA+P + + + Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100 Query: 545 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 640 +Y+ + +V E +GWYH+ P Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132 >Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical protein D2013.7 protein. Length = 294 Score = 33.1 bits (72), Expect = 0.53 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +2 Query: 422 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 601 A++ G + MG L+G + ++ V + FA+P + + Q + M I A K+ Sbjct: 29 AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85 Query: 602 RHENAIGWY 628 +E +GW+ Sbjct: 86 PNEQPVGWF 94 >U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical protein T19D12.10 protein. Length = 455 Score = 30.7 bits (66), Expect = 2.8 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 637 VTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHSV 479 + +P +GIL + L + +++ ++ + T+F F+R+S +VH N SV Sbjct: 169 IITMPLSGILCESSLG--WRSIYYLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219 >U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical protein T19D12.9 protein. Length = 462 Score = 29.9 bits (64), Expect = 4.9 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = -3 Query: 646 VPRVTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHS 482 + + ++P +G+L + L + ++F +S+ F TF+R+S VH N S Sbjct: 171 ISSIILMPVSGVLCESQLG--WRYIFYLFGGISVIAHIIFFTFFRDSATVHRNVS 223 >AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical protein T28C12.6 protein. Length = 333 Score = 29.1 bits (62), Expect = 8.6 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 116 NANRSFNHFRSFKKSTK*Y*PFYFN*FNSTMASTSADS 229 N N FN FRS+ P N F+S M STS +S Sbjct: 167 NVNPQFNVFRSYSNDLVGSLPLCRNYFHSCMTSTSCES 204 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,417,653 Number of Sequences: 27780 Number of extensions: 473484 Number of successful extensions: 1117 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1112 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 4349991404 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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