Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B02_e10_04.seq
(1509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 272 5e-73
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 263 2e-70
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 263 2e-70
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 126 4e-29
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 41 0.002
At3g06820.1 68416.m00809 mov34 family protein similar to SP|P467... 40 0.004
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 40 0.006
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 40 0.006
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H... 39 0.010
At3g42980.1 68416.m04514 hypothetical protein 32 1.1
At5g33240.1 68418.m03931 hypothetical protein 31 2.6
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 30 4.6
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 29 8.0
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit 5A
(CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2)
COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 272 bits (666), Expect = 5e-73
Identities = 144/270 (53%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
Frame = +2
Query: 227 SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
S S IA+KTW + N++ V S D+I+ YD Q KPWE DPH+FK +KISA
Sbjct: 4 SSSTIARKTWELENSILTVDSPDSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISA 63
Query: 395 LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
LALLKMV+HARSGGT+E+MGL+ GK D +T+IVMD+FALPVEGTETRVNAQ AYEYM
Sbjct: 64 LALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVE 123
Query: 575 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
Y + K GR EN +GWYHSHPGYGCWLSGIDVSTQ LNQ QEPF+A+VIDP RT
Sbjct: 124 YSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAG 183
Query: 755 KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
K + S GYKP QTIPL K +FG FK+ L
Sbjct: 184 KVEIGAFRTYSKGYKPP-DEPVSEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLDSHLL 242
Query: 935 GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
L K W NTL L N DY G S
Sbjct: 243 DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit 5B
(CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1)
COP9 complex subunit CSN5-1; identical to Arabidopsis
homologs of a c-Jun coactivator AJH1 GI:3641314 from
[Arabidopsis thaliana]; identical to cDNA CSN complex
subunit 5B (CSN5B) GI:18056662; contains Pfam profile
PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 263 bits (645), Expect = 2e-70
Identities = 140/270 (51%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
Frame = +2
Query: 227 SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
S S IA+KTW + NN+ V S D I+ YD Q I KPW DP++FK + ISA
Sbjct: 4 SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63
Query: 395 LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
LALLKMV+HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ AYEYM
Sbjct: 64 LALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVE 123
Query: 575 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
Y + +K GR EN +GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPF+A+VIDP RT
Sbjct: 124 YSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAG 183
Query: 755 KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
K + G+K QTIPL K +FG FK+ L
Sbjct: 184 KVEIGAFRTYPEGHKIS-DDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLL 242
Query: 935 GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
L K W NTL L N DY G S
Sbjct: 243 DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit 5B
(CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1)
COP9 complex subunit CSN5-1; identical to Arabidopsis
homologs of a c-Jun coactivator AJH1 GI:3641314 from
[Arabidopsis thaliana]; identical to cDNA CSN complex
subunit 5B (CSN5B) GI:18056662; contains Pfam profile
PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 263 bits (645), Expect = 2e-70
Identities = 140/270 (51%), Positives = 166/270 (61%), Gaps = 4/270 (1%)
Frame = +2
Query: 227 SQSNIAQKTWVMANNMEIV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 394
S S IA+KTW + NN+ V S D I+ YD Q I KPW DP++FK + ISA
Sbjct: 4 SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63
Query: 395 LALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTA 574
LALLKMV+HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ AYEYM
Sbjct: 64 LALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVE 123
Query: 575 YIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTXFXW 754
Y + +K GR EN +GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPF+A+VIDP RT
Sbjct: 124 YSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAG 183
Query: 755 KSLPWCXQNISXGYKPC**RXXXNIQTIPLXKXRNFGGXLATXXFP*SXXFKTPLXXGXT 934
K + G+K QTIPL K +FG FK+ L
Sbjct: 184 KVEIGAFRTYPEGHKIS-DDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLL 242
Query: 935 GXHLGXKXWXNTLXRLNLDPNPDYPTGNYS 1024
L K W NTL L N DY G S
Sbjct: 243 DL-LWNKYWVNTLSSSPLLGNGDYVAGQIS 271
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 126 bits (304), Expect = 4e-29
Identities = 58/124 (46%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
Frame = +2
Query: 374 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 550
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEA 85
Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 730
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VA+V+D
Sbjct: 86 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 145
Query: 731 PVRT 742
P+++
Sbjct: 146 PIQS 149
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 386 ISALALLKMVMH---ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 556
+ L LL +V H + V+G+LLG T+ V +S+A+P E + +
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLD 78
Query: 557 YEYMTAYIEAAKQVGRHENAIGWYHSHP 640
+ Y + K++ E+ +GWY + P
Sbjct: 79 HNYHESMFHMFKRINAKEHIVGWYSTGP 106
>At3g06820.1 68416.m00809 mov34 family protein similar to SP|P46736
C6.1A protein {Homo sapiens}; contains Pfam profile
PF01398: Mov34/MPN/PAD-1 family
Length = 324
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 599 GRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIV 724
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLI 47
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 39.5 bits (88), Expect = 0.006
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 380 IKISALALLKMVMH---ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQA 550
+ + L LL +V H + V+G+LLG + V +S+A+P E + +
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 551 QAYEYMTAYIEAAKQVGRHENAIGWYHSHP 640
+ Y + K++ E+ +GWY + P
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGP 106
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 39.5 bits (88), Expect = 0.006
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 617 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
+GW H+HP GC++S +D+ T Q AIV+ P
Sbjct: 123 VGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAP 161
>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 507
Score = 38.7 bits (86), Expect = 0.010
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 617 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 733
+GW H+HP C++S IDV T Q VAIV+ P
Sbjct: 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAP 445
>At3g42980.1 68416.m04514 hypothetical protein
Length = 303
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
W+I K W YT MT ++ L+ +HG KIH + + K +S+F
Sbjct: 18 WRIQVKVFHSWRQYTSMTGETLELVLVDAHGVKIH--ASVKKDLVSNF 63
>At5g33240.1 68418.m03931 hypothetical protein
Length = 192
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
W++ K W YT+MT K+ L+ S G KIH + + K +S +
Sbjct: 18 WRVQVKVLHSWCQYTNMTGETLKLVLVNSQGVKIH--ASVKKDLVSKY 63
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 29.9 bits (64), Expect = 4.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 218 SADSQSNIAQKTWVMANNMEIVS-NVDDIYRYDKKQQ-QDILAAKPWEKDPHFFKDIKIS 391
S D++++I K V N+E S ++ ++ R KK+ Q K WE D F + S
Sbjct: 368 SRDTETDIVLKGVVRVTNLEDASEHIGEVLRRVKKEHLQRAYKIKDWEDDHDFLLQLCKS 427
Query: 392 ALALLK 409
+ LLK
Sbjct: 428 SGKLLK 433
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 261 WQIIWK*CPMWTIYTDMTRSNNKISLLRSHGRKIHIFSKISKSRLSHF 404
W++ K W YT TR ++ + HG+K+H + + K +S F
Sbjct: 18 WRVQVKILHSWKQYTSNTRETIELVISDEHGKKMH--ATVKKELVSKF 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,951,973
Number of Sequences: 28952
Number of extensions: 434894
Number of successful extensions: 994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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