Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B01_e2_03.seq
         (1560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    43   1e-04
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    36   0.020
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.57 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    29   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   2.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   7.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   7.0  

>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
 Frame = +1

Query: 439 QVKDEVGVRCQKLFQDFLEEFKEDN------------ELKYEKHAKELLKPELSTLEVSF 582
           +V D  G   ++ F++FL  F +D             E  Y +    L   E+ T+ V +
Sbjct: 63  KVIDTTGESVREAFEEFLLSFSDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDY 122

Query: 583 DDVEKYNQNLATTIIEEYYRIYPFLNQAIXNYVLGFADXGLKKRITKQ 726
             +  YN  LA  I+E+YYR  PFL +A+   +  F     +  ++++
Sbjct: 123 KHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFEPEYYRSSLSRE 170


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 35.5 bits (78), Expect = 0.020
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 469 QKLFQDFLEEFKEDNELKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYRIY 648
           +K F  F+EEF  DN+  Y    ++ L  +   L +    +  YN++LA  ++ +   I 
Sbjct: 31  EKNFIQFIEEFVIDNDFIYRTQLRDNLVVKQYMLNIDLRHLISYNEDLAHLLLSQPTDIL 90

Query: 649 PFLNQAI 669
           P    A+
Sbjct: 91  PLFESAV 97


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 1084 KXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXGGXG 1230
            K     P  PP       P P   P   P P    PP P PP    G G
Sbjct: 726  KLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +1

Query: 1057 PXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            P    P   K     P  PP       P P  G    P P A  PP P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
 Frame = +1

Query: 1111 PPARXPXXXPGPLXGPXGGP---XPRAXXPPXPXPPG 1212
            PP   P     P+  P G P    P    PP P P G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +1

Query: 1057 PXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            P  G P   K     P  PP       P P  G    P P +  PP P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTP 1222



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = +1

Query: 1111 PPARXPXXXPGPLXGPXGG---PXPRAXXPPXPXP 1206
            PP   P     P+  P G    P P    PP P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 173 SKYLYN*KSN*NWYFNFTINCNKTVHSVVKK*NIHLSWGLLNCIY*SNQLEIDKNNHELK 352
           S +L N K +  W + F I CN + +S  +  ++   W     +   +Q E     HEL+
Sbjct: 465 SSFLNNLKEDTEWLYTFPIGCNISFYSTTEMRSLRSPW---ENLMREHQFEPTAKMHELQ 521


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
 Frame = +1

Query: 1042 PXRNXPXGGX---PGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P R+ P  G    P       + P  PP   P     P   P G    R   PP P PP
Sbjct: 365  PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS-APALPPLGNAS-RTSTPPVPTPP 421



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +1

Query: 1057 PXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            P    P         P  PP+  P   P P   P   P P A   P P P
Sbjct: 432  PPSAPPSLPMGAPAAPPLPPS-APIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 1111 PPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXG 1221
            PP R     P  +  P   P P +  PP   PP   G
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 445 KDEVG-VRCQKLFQDFLEEFKEDNELK 522
           KD+ G +RCQ +F   +  F E N+LK
Sbjct: 283 KDDDGRIRCQPIFSRIISLFAEHNDLK 309


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +2

Query: 1118 PGTPXPXPGPXXGRXGALXPGQXXPPXXPPRGQXGAKXKPG 1240
            P  P P   P  G   A  P    PP  PP G       PG
Sbjct: 1882 PPPPPPMALPKAGPPSA-APTSALPPAGPPAGATAISGNPG 1921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,445,351
Number of Sequences: 5004
Number of extensions: 72777
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 878103082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)