Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B01_e2_03.seq
         (1560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   5.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   9.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 445 KDEVGVRCQKLFQDFLEEFKEDNELKYEKHAKELLKP-ELSTLEVSFD 585
           K EV   C K F D L +  E +++  + HAK +    E +T + S D
Sbjct: 526 KIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMD 573


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -1

Query: 186 YKYFEDIQYNSENRNY--XLIAKQKINTI*QKVXP----RGGFSPRQXG 58
           YKY  + +YN  N NY   L  K  I  I Q   P     G F PR  G
Sbjct: 96  YKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYYGNFPPRPMG 144


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 167 MSSKYLYN*KSN*NWYFNFTINCNKTVHSV 256
           +S+K ++N   N N+ +N+  NC K  +++
Sbjct: 85  LSNKTIHN---NNNYKYNYNNNCKKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,759
Number of Sequences: 438
Number of extensions: 7422
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)