Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A12_e89_02.seq
         (1445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   7.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   9.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   9.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   9.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 383 RANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPN 520
           +A+ A+ P     P+G  T +T+A+P  +   +   Q     PT N
Sbjct: 208 KASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGN 253


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 167 SCSKLFKYHLSSRRRVASG 111
           +C KLF+   SS  R ASG
Sbjct: 893 TCEKLFRMKKSSALRPASG 911


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 420 LGGSFGQLARFARRPPRTLLQVTNRTIA 337
           +GG+ G+L R +    R+ L    RTIA
Sbjct: 168 IGGTTGKLRRRSTAASRSRLAAFKRTIA 195


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 647 PSGISTRSRRRNSVILLR*RGRNSGALSIPTTS*QSNSILEDM 775
           PSGIS+     N  + L+    NSG LS+  T+  S +  +++
Sbjct: 474 PSGISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETFTQNL 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,267
Number of Sequences: 336
Number of extensions: 4759
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43120925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)