Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A12_e89_02.seq
         (1445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   1.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   8.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   8.5  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 568 VHNILDVDKDGLISFNDFVLFAERFKSLGHLDEK 669
           V N+ D DK+G I F +F+  A    S G L++K
Sbjct: 68  VFNVFDADKNGYIDFKEFIC-ALSVTSRGELNDK 100


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 380 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTP 511
           RR++  + P  P  PS     N     KPI GN+   Q+P+ +P
Sbjct: 178 RRSSAGTDPFSPVSPSNP---NFLTPLKPIDGNQEWQQSPLESP 218


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 407  NEPPRPSGDATANTTAAPKPIAGNENLIQ 493
            N PP P+  A  NTT A  P+      I+
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIK 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,213,571
Number of Sequences: 5004
Number of extensions: 76383
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 806794268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)