Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A12_e89_02.seq
(1445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0173 + 21502765-21504216 32 1.3
05_01_0450 + 3577928-3579526,3579695-3579832 31 1.7
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 31 2.3
07_03_1382 - 26170563-26170631,26171151-26171843 30 3.9
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 30 3.9
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 30 5.2
03_06_0094 + 31610866-31611288 29 6.9
01_06_0369 - 28794283-28794427,28794865-28795874 29 6.9
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 9.1
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 29 9.1
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 29 9.1
05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455 29 9.1
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 29 9.1
>03_05_0173 + 21502765-21504216
Length = 483
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 404 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 580
P PP P G A + P N+ L+ N PTP + L+ N +TT+
Sbjct: 272 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTPVSTPLVASNQSESSAMTTTTT 330
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 31.5 bits (68), Expect = 1.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 577 ILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFSDIIK 699
+LD + DG +S ++F LF +R K L+ K E+ +I+K
Sbjct: 513 LLDANSDGSLSSDEFALFQKRVKLKTKLENKD-DEYKEILK 552
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 431 DATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 580
+A + AP I GN +QN + P+ + +VQN V+ +P+++S
Sbjct: 159 NADVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLVQNVDVLVKQPTSSS 208
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 386 ANLASWPNEPPRPSGDATANTTAAPKPI 469
A L P PP+PSGDA N P P+
Sbjct: 180 AQLGPPPPPPPQPSGDANENPPPPPPPL 207
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 380 RRANLASWPNEPPRPSGDATANTTAAPK 463
R LA P EP P+ A A T AAPK
Sbjct: 177 REERLAQGPREPAAPAAAAPAQTAAAPK 204
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 559 MRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFSDIIKMTWEEQWGAIDPY 738
++ + ++D D DG++S+ + +F S HL E + + + + GA+D
Sbjct: 442 IKDMFKVMDTDNDGIVSYEELKSGIAKFGS--HLAESEVQMLIEAVDTNGR---GALDYG 496
Query: 739 NFVTVEQYFRRHAS 780
F+ V + +R A+
Sbjct: 497 EFLAVSLHLQRMAN 510
>03_06_0094 + 31610866-31611288
Length = 140
Score = 29.5 bits (63), Expect = 6.9
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 365 SVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLI 490
S GGRR A P P P D TA AAPKP + +
Sbjct: 78 SPAGGRRRRGAVAPLVFPLPEEDDTAVAAAAPKPAVARKRRV 119
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 550 RRKMRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFSD 690
++KM D+D D +S +DF+++ + K +G +D+K SD
Sbjct: 318 QKKMDNEPLAADLDHDASVSKSDFLIY--KLKEIGKIDDKDIAMISD 362
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 410 EPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVR 559
+P G + TAAP+ A N L+ N TP+ +A + N +VR
Sbjct: 585 QPISHYGSIPSGATAAPEAAATNSELVCNSGATPSASATGAAMTNLQLVR 634
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 553 RKMRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQ 672
RK+R++HN LD ++ GL+ + F + F + G+ EK+
Sbjct: 11 RKLRSLHNALDCERSGLVRY--FSTASGSFPTKGNGAEKR 48
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 29.1 bits (62), Expect = 9.1
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 553 RKMRTVHNILDVDKDGLISFNDFV--LFAERFKSLGHLDEKQAKEFSDIIKMTWEEQWGA 726
RKMR H IL + GL+ N + F ++ L ++K ++E S II T+E++ A
Sbjct: 177 RKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIID-TYEKEIKA 235
Query: 727 I 729
+
Sbjct: 236 L 236
>05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455
Length = 559
Score = 29.1 bits (62), Expect = 9.1
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 577 ILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFSDIIK 699
+LD + DG +S ++F LF +R + L++K E+ +I++
Sbjct: 494 LLDDNNDGSLSSDEFALFQKRVELKAKLEDKD-DEYKEILR 533
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 29.1 bits (62), Expect = 9.1
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 559 MRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFS 687
++ + + D+DK+G++ + +FV + + +G+ DE K FS
Sbjct: 406 LKILMDAADIDKNGILDYQEFVAVSIHVRKIGN-DEHIQKAFS 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,335,854
Number of Sequences: 37544
Number of extensions: 666518
Number of successful extensions: 4531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4431
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4594434768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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