Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A12_e89_02.seq
         (1445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                36   0.080
SB_13028| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.43 
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.75 
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.3  
SB_51603| Best HMM Match : TIMP (HMM E-Value=0.00017)                  31   3.0  
SB_48217| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.0  
SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038)                  30   5.3  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    30   5.3  
SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)                30   5.3  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    29   7.0  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   9.2  
SB_38869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_32003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_30732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.2  
SB_3084| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.2  

>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 35.9 bits (79), Expect = 0.080
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 368 VRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGN-ENLIQNPIRTPTPNARDL 532
           V+     N  S P++PP PS D T  TT  P P  G       NP  TP+PN  DL
Sbjct: 611 VQAAEAENNRSNPSQPP-PSQDQTTTTTGNPSPPQGQPATTTGNP--TPSPNHNDL 663


>SB_13028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 33.5 bits (73), Expect = 0.43
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -2

Query: 139 CHPVDASRREQYGAFNQNTELHRXSSAEFLQPGGXPLVXRAAAT 8
           C+ + A RR   G  + N  L R    EFLQPGG     RAAAT
Sbjct: 12  CNRMCARRRPLAGVVDLNHLLRRHEDIEFLQPGGS-TSSRAAAT 54


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 398 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDL 532
           S P    + SG +T N + A    AGN + +  P R P P+AR L
Sbjct: 332 SSPASGAQTSGSSTRNASTAVTASAGNNSPLAPPSRPPPPSARPL 376


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 374 GGRRANLASWPNEPPRPSG-DATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSG 550
           G +  + AS P  PPRP+G    ANT      +   +N    P  T  P  +D     + 
Sbjct: 622 GEKDDSKASRPELPPRPTGLKKPANTGRVSNDVGLTKNAPNKPKSTTLPRRQD--SDPTV 679

Query: 551 VVRCEPSTT 577
            V C+PS T
Sbjct: 680 KVSCKPSPT 688


>SB_51603| Best HMM Match : TIMP (HMM E-Value=0.00017)
          Length = 251

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 688 DIIKMTWEEQWGAIDPYNFVTVEQYFRRHASC 783
           ++    W E WG +     + V++Y+ RH +C
Sbjct: 164 EVFSCNWVEPWGNLTVSQQIAVKRYYGRHCAC 195


>SB_48217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 105 MVRLTKTQSFIDXRVPNSCSPGXXH*XLERPPP 7
           ++R+T   + I  ++ NSCSPG     LERPPP
Sbjct: 2   LMRVTVAGASIVQQISNSCSPGDPL-VLERPPP 33


>SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038)
          Length = 274

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 213 KMAVSIMRLGLRSVFNFERCTAVFCVTSAPNQVTLI--HTNASMQWCGLLPE--GASAAG 380
           K    I  + +RS+ + E     F + +  + + L   H    + W   LPE  G S   
Sbjct: 157 KRKYDISNISVRSLEDTEGILNAFEIKANGDVMKLSTNHAPEKVAWMETLPELLGQSGVS 216

Query: 381 DARISRAGRTSRQGPQAMLQQTPRPPRNRS 470
                R+    R G QA+    P PPRN +
Sbjct: 217 PTLSDRSPWEVRHGGQAVGTDKPSPPRNEA 246


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 550  RRKMRTVHNILDVDKDGLISFNDF-----VLFAERFKSLGHLDEKQAKEFSDIIKMTWEE 714
            + ++ TV ++LDVD  G I F++F     +L A + K   H   + ++   D++    E+
Sbjct: 1422 KSEIYTVFDMLDVDCSGSIDFDEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLD---ED 1478

Query: 715  QWGAIDPYNF 744
              G I  Y F
Sbjct: 1479 DSGNISAYEF 1488



 Score = 29.9 bits (64), Expect = 5.3
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 523  KGFDRSEFWRRKMRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKE 681
            K  +   F  R  RTV ++LD D  G IS  +F    ERF  L +L+ K  +E
Sbjct: 1456 KDKEEKHFIHRHSRTVFDLLDEDDSGNISAYEF----ERFGFLFNLEGKAIRE 1504


>SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)
          Length = 151

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +1

Query: 550 RRKMRTVHNILDVDKDGLISFNDF-----VLFAERFKSLGHLDEKQAKEFSDIIKMTWEE 714
           + ++ TV ++LDVD  G I F++F     +L A + K   H   + ++   D++    E+
Sbjct: 39  KSEIYTVFDMLDVDCSGSIDFDEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLD---ED 95

Query: 715 QWGAIDPYNF 744
             G I  Y F
Sbjct: 96  DSGNISAYEF 105



 Score = 29.9 bits (64), Expect = 5.3
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 523 KGFDRSEFWRRKMRTVHNILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKE 681
           K  +   F  R  RTV ++LD D  G IS  +F    ERF  L +L+ K  +E
Sbjct: 73  KDKEEKHFIHRHSRTVFDLLDEDDSGNISAYEF----ERFGFLFNLEGKAIRE 121


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 404 PNEPPRPSGDATANTTAAPKP 466
           P EPPRPS  ATA+    P+P
Sbjct: 261 PAEPPRPSPAATAHPVMPPRP 281


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 389 NLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 523
           N +S P+  P P+  +  ++  +P PI+ N ++  +PI  P P++
Sbjct: 502 NPSSNPSSDPSPNPSSNPSSEPSPNPIS-NPSISTSPISNPHPSS 545


>SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 81  SFID--XRVPNSCSPGXXH*XLERPPP 7
           S+ID   RV NSCSPG     LERPPP
Sbjct: 176 SWIDWTRRVSNSCSPGDPL-VLERPPP 201


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 541 EFWRRKMRTVHNILDVDKDGLISFNDFVLF 630
           E+    +  +  ++D  KDGLISF++FV F
Sbjct: 726 EYNETTLELLAGVVDQTKDGLISFSEFVAF 755


>SB_38869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 87 TQSFIDXRVP-NSCSPGXXH*XLERPPP 7
          T + I   +P NSCSPG     LERPPP
Sbjct: 5  TDTLISANIPSNSCSPGDPL-VLERPPP 31


>SB_32003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 72 DXRVPNSCSPGXXH*XLERPPP 7
          D R  NSCSPG     LERPPP
Sbjct: 9  DDRTSNSCSPGDPL-VLERPPP 29


>SB_30732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 90  KTQSFIDXRVPNSCSPGXXH*XLERPPP 7
           K  +F+     NSCSPG     LERPPP
Sbjct: 63  KAANFVTATESNSCSPGDPL-VLERPPP 89


>SB_23700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 87 TQSFIDXRVPNSCSPGXXH*XLERPPP 7
          T+ F    V NSCSPG     LERPPP
Sbjct: 2  TEEFRITAVSNSCSPGDPL-VLERPPP 27


>SB_3084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 87 TQSFIDXRVP-NSCSPGXXH*XLERPPP 7
          T + I   +P NSCSPG     LERPPP
Sbjct: 5  TDTLISANIPSNSCSPGDPL-VLERPPP 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,825,067
Number of Sequences: 59808
Number of extensions: 635239
Number of successful extensions: 2547
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2524
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4648159692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)