Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A12_e89_02.seq
         (1445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical pr...    31   2.0  
Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical pr...    30   4.7  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    30   4.7  
AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage ...    30   4.7  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   8.2  

>Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.6 protein.
          Length = 368

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 26/93 (27%), Positives = 38/93 (40%)
 Frame = -2

Query: 595 PCLHPGCCGRFASYDARILNDQIPCIRCRSPNRILNQILVSCDRFRGGRGVCCSIA*GPW 416
           PC  P     F  +DAR     + C   +   R+     +     RGGRG  CSI     
Sbjct: 16  PC--PDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGGLCSI----- 68

Query: 415 RLVRPAREIRASPAADAPSGNKPHHCIEAFVWI 317
           RL +P   +R  P +D       H  I A++++
Sbjct: 69  RLSKPLLTLR--PRSDLVE-TLLHEMIHAYLFV 98


>Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical
           protein B0035.5 protein.
          Length = 522

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 729 DSAPLFLPRHLNNITEFLRLLLVEMPEGFEPLSEKDEIIERDQPV-LVYIQDVVDGSHLT 553
           D+A +      N++ + L L+ +E P        +DE ++  +   +V ++DVV G ++ 
Sbjct: 257 DTAGIIRDVMQNHLMQILTLVAMEKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIA 316

Query: 552 TPEF 541
           +PEF
Sbjct: 317 SPEF 320


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 302 KSSNVNPHKRLDAMVRFVT*-RSVRGGRRANLASWPNEPPRP 424
           KS + +P KR D   R  +  RS  GGRR+   S PN  P P
Sbjct: 224 KSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSP 265


>AF025464-4|AAB71017.3|  310|Caenorhabditis elegans Mnat (menage a
           trois) tfiih subunitprotein 1 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 532 DRSEFWRRKMRTVHNILDVDKDGLISFNDFVLFAERFKSL 651
           D+  F RRK+R ++N+   D + L  F D   + ERF+++
Sbjct: 67  DKETFLRRKLRKIYNLKQDDFENLREFGD---YQERFETV 103


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 404 PNEPPRPSGDATANTTAAPKPIA 472
           P  PP P+  ATA    APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,828,577
Number of Sequences: 27780
Number of extensions: 487418
Number of successful extensions: 2205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2169
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4131451166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)