Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A11_e81_01.seq
         (1565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    33   0.11 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   4.0  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   7.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   9.3  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 229 SNEVFHVVAATIYYYEDNYEAALKIFH-DIELVELRAYSIQCLLAMNRPDLARXXXXXXX 405
           S+ V   + A       +++ A+ +    +E +E  A  +   L  ++ + A        
Sbjct: 94  SDSVVQTLGAIFQIKNGSFDDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQAL 153

Query: 406 XXXDDGTLTQLAQAWINLSQGG-PGVQDAHYSIMELS 513
              D+  + QLAQ+WI +  GG     DA Y   EL+
Sbjct: 154 DWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 297 QSCFIIIFIVINSGSNYMK-YLIR*LCTFC 211
           ++ F ++ I+  + SNY++ YL+R LCT C
Sbjct: 596 RAVFELLEIIQMASSNYLRLYLLRGLCTLC 625


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 323 WS*EHTLYSACWP*TVRIWRGKN*NCYRNLR 415
           W  ++ +YS+ +  T+RIW  K+  C   L+
Sbjct: 277 WGGQNWIYSSSYDKTIRIWDAKDGKCLHILK 307


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 139  KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNY 285
            KS+      G++ P +VA  + R    +E   E F      + YY +NY
Sbjct: 1202 KSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNY 1250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,729
Number of Sequences: 5004
Number of extensions: 48541
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 882067430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)