Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A11_e81_01.seq
         (1565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524...    87   4e-17
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003...    79   1e-14
03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657     30   4.3  

>04_04_1355 +
           32851514-32851696,32852132-32852224,32852334-32852485,
           32852702-32852837,32852947-32853102,32853233-32853312,
           32853475-32853568
          Length = 297

 Score = 87.0 bits (206), Expect = 4e-17
 Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
 Frame = +1

Query: 61  RXFGTRGNHRIVLQELKT-ADPILQPLKSLVDYLSPGAN-KPAIVADIDARVAKGTELSN 234
           R +   G+H++V+ E+   A   LQ ++ L  YLS GA  K + +  ++  +A     SN
Sbjct: 52  RSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSN 111

Query: 235 EVFHVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXX 414
            +  +VA T+  +E +Y  ALK  +    +EL A ++Q  L M+R D A           
Sbjct: 112 PILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLD 171

Query: 415 DDGTLTQLAQAWINLSQGGPGVQDAHYSIMELSE 516
           +D TLTQLA AW++L  GG  +Q+AH    +LSE
Sbjct: 172 EDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSE 205


>04_04_1127 -
           31098233-31098326,31099968-31100047,31100198-31100353,
           31100481-31100616,31101195-31101346,31102307-31102390,
           31102495-31102656
          Length = 287

 Score = 78.6 bits (185), Expect = 1e-14
 Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
 Frame = +1

Query: 61  RXFGTRGNHRIVLQEL-KTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNE 237
           R +   G++++V+ E+  +A   LQ +K L  YLS   +K + +  +   ++     SN 
Sbjct: 45  RSYVALGSYQLVISEIDSSAATSLQAVKLLALYLS--GDKESAIVSLKEWLSDSAVGSNP 102

Query: 238 VFHVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXD 417
           V  ++A  I+ +E +Y  ALK  H    ++L A ++Q  + M+R D A           +
Sbjct: 103 VLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDE 162

Query: 418 DGTLTQLAQAWINLSQGGPGVQDAHYSIMELSE 516
           D TLTQLA AW++++ GG  +++A+    + +E
Sbjct: 163 DHTLTQLANAWLDIAVGGSKIREAYLIFQDFAE 195


>03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657
          Length = 413

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 20/46 (43%), Positives = 22/46 (47%)
 Frame = +2

Query: 452 LICRRAGPGCRMRITASWSSPSGSARWGPDPPRSERPLQLPEVXGR 589
           L CRR G   R    ASWS PSG     P P  S  PLQ+    G+
Sbjct: 51  LTCRRRGVVVR---AASWS-PSGPESLPPPPSSSIAPLQMESPVGQ 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,260,073
Number of Sequences: 37544
Number of extensions: 379384
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5058519088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)