Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A11_e81_01.seq
         (1565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)            39   0.009
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 30   4.4  

>SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)
          Length = 155

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 76  RGNHRIVLQELK-TADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVV 252
           +G + +V+ E+   + P +QP++ L DYL   + +  I++ I+ ++   T   N+ + ++
Sbjct: 33  QGKYSVVMDEISGMSPPEVQPVRVLADYLQNPSRRDNILSSIEKKL--NTSDINDYYLLM 90

Query: 253 AATIYYYEDNYE 288
           AA++Y++E   E
Sbjct: 91  AASVYFHEQGGE 102


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 288 FIIIFIVINSGSNYMKYLIR*LCTFCNPSINVCYYGRFICSRR*IIY*GFQRLKYRVSGL 109
           FI++ +V   GS+ + Y +     +C+ S+N   Y  +  + R       +R   R+  L
Sbjct: 254 FIVVSVVFTDGSHSVAYKLSYFLVYCSSSVNPLIYAYYSSNYRNAFSEVLERYSQRIRNL 313

Query: 108 Q 106
           +
Sbjct: 314 E 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,753,129
Number of Sequences: 59808
Number of extensions: 398624
Number of successful extensions: 845
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5117670772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)