Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A11_e81_01.seq
(1565 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein. 109 3e-23
BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein comple... 109 3e-23
BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein comple... 109 3e-23
BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein comple... 109 3e-23
AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of coat... 109 3e-23
AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein pro... 109 3e-23
AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein. 109 3e-23
AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein. 109 3e-23
AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein. 108 5e-23
AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein. 58 1e-07
>CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of
coatomer protein complex isoform a variant protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein
protein.
Length = 308
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein.
Length = 307
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 67 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 126
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 127 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 186
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 187 WVSLATGGEKLQDAYYIFQEMAD 209
>AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein.
Length = 245
Score = 109 bits (262), Expect = 3e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 5 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 64
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 65 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 124
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 125 WVSLATGGEKLQDAYYIFQEMAD 147
>AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein.
Length = 308
Score = 108 bits (260), Expect = 5e-23
Identities = 52/143 (36%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNITFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 447
++ N +AAL+ H + +E A ++Q LL ++R DLAR +D TLTQLA A
Sbjct: 128 LHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATA 187
Query: 448 WINLSQGGPGVQDAHYSIMELSE 516
W++L+ GG +QDA+Y E+++
Sbjct: 188 WVSLATGGEKLQDAYYIFQEMAD 210
>AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein.
Length = 147
Score = 57.6 bits (133), Expect = 1e-07
Identities = 26/80 (32%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +1
Query: 91 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 267
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 68 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 127
Query: 268 YYEDNYEAALKIFHDIELVE 327
++ N +AAL+ H + +E
Sbjct: 128 LHDQNPDAALRALHQGDSLE 147
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,782,488
Number of Sequences: 237096
Number of extensions: 2227011
Number of successful extensions: 3918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3910
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23302260226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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