Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A11_e81_01.seq
         (1565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    54   3e-07
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    31   1.7  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
 Frame = +1

Query: 61  RXFGTRGNHRIVLQELKTADPI--LQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSN 234
           R +  +G   I L+E+  A     L  ++   ++ +  A K  I+A++   VA    + +
Sbjct: 44  RSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKS 102

Query: 235 EVFHVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXX 414
           E+  V+AATI    D  + A +     E +E RA  +  L+ MN+  LA           
Sbjct: 103 EIAAVLAATILNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQID 162

Query: 415 DDGTLTQLAQAWINLSQGGPGVQDAHYSIMELSE 516
           +D TL+QLA A +        V+DA Y   E+S+
Sbjct: 163 EDATLSQLANALVTSFGASGKVKDALYIYSEMSD 196


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 244  HVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDL 378
            H V + ++     Y   + IF  + + ++RA     L  MNRPD+
Sbjct: 1075 HTVCSIVFLVLPQYNLGIAIFRGLMIYQVRAIGSNFLQQMNRPDM 1119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,530
Number of Sequences: 27780
Number of extensions: 303968
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)