Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A08_e57_02.seq
         (1430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                       93   5e-19
06_02_0140 + 12255418-12255512,12257514-12257793                       92   1e-18
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     88   1e-17
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226     31   2.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   3.9  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   9.0  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   9.0  

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
 Frame = +1

Query: 46  FKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDED 225
           FKK+AP AIKEIR+FA+K MGT DVRVD +LNK++WS G+R+VP             +ED
Sbjct: 32  FKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEED 91

Query: 226 SAHKLFTLVTY--VPVASIKGLQTENVD 303
           +  +L++LVT   VP   +KGL T+ VD
Sbjct: 92  AKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 91.9 bits (218), Expect = 1e-18
 Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
 Frame = +1

Query: 37  GVGFKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKX 216
           G  FKK+AP AIKEIR+FA+K MGT DVRVD +LNK++WS G+R+VP             
Sbjct: 31  GCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRND 90

Query: 217 DEDSAHKLFTLVTY--VPVASIKGLQTENVD 303
           +ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 91  EEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 88.2 bits (209), Expect = 1e-17
 Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +1

Query: 46  FKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDED 225
           FKK+AP AIKEIR+FA+K MGT D+R+D +LNK +W+ G+R+VP             +ED
Sbjct: 49  FKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEED 108

Query: 226 SAHKLFTLVTY--VPVASIKGLQTENVD 303
           +  +L++LVT   +P   +KGL T+ V+
Sbjct: 109 AKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
          Length = 568

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -3

Query: 210 ASAR*SYTNTEWNIPDSF*PKIFV*XGIYSYVWSTHXFFSESPDLLDSTGCTLLETNTAS 31
           A+A     N  W +P  F         ++ Y+     FF E+PD + ST CT L   T +
Sbjct: 446 AAASGEAINIAWQMPQYF---FLAGAEVFCYIAQLEFFFGEAPDTMKST-CTSLALLTIA 501

Query: 30  CG 25
            G
Sbjct: 502 LG 503


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 399 ITIHWPSFYNVV-TGKTLALPNLIALQH 479
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 LNRLAAHPPFASWRNXEEARTDRPSQQLRXLNG 559
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 LNRLAAHPPFASWRNXEEARTDRPSQQLRXLNG 559
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,820,365
Number of Sequences: 37544
Number of extensions: 461437
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4536424228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)