Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A08_e57_02.seq
         (1430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   109   4e-24
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    81   1e-15

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  109 bits (263), Expect = 4e-24
 Identities = 50/92 (54%), Positives = 64/92 (69%)
 Frame = +1

Query: 37  GVGFKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKX 216
           G+G KKRAPRAI EI++FA+  M T DVRVDT+LNK++WSKG++NVP+            
Sbjct: 31  GIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNE 90

Query: 217 DEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 312
           DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 91  DEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 36/70 (51%), Positives = 46/70 (65%)
 Frame = +1

Query: 103 MGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDEDSAHKLFTLVTYVPVASIKG 282
           M T DVRVDT+LNK++WSKG++NVP+            DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 283 LQTENVDASQ 312
           L   NVD+ +
Sbjct: 61  LTNVNVDSEE 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,588,292
Number of Sequences: 27780
Number of extensions: 371627
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4079417776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)