Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A08_e57_02.seq
         (1430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            91   2e-18
At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    90   3e-18
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            87   3e-17

>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
 Frame = +1

Query: 46  FKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDED 225
           FKK+AP+AIKEIR+FAEK MGT DVRVD +LNK +WSKG+R  P             DED
Sbjct: 29  FKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88

Query: 226 SAHKLFTLVTY--VPVASIKGLQTENVD 303
           +  + F+LVT   +P   + GL T+ ++
Sbjct: 89  AKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
 Frame = +1

Query: 46  FKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDED 225
           FKK+AP+AIKEIR+FAEK MGT DVRVD +LNK +WSKG+R  P             DED
Sbjct: 29  FKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88

Query: 226 SAHKLFTLVTY--VPVASIKGLQTENVD 303
           +  + F+LVT   +P   + GL T+ ++
Sbjct: 89  AKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
 Frame = +1

Query: 46  FKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKXDED 225
           FKK+AP AIKEIR+FA K MGT DVRVD +LNK +WSKG+R  P             DED
Sbjct: 29  FKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88

Query: 226 SAHKLFTLVTY--VPVASIKGLQTENVDASQ 312
           +  + F+LVT   +P   + GL T+ ++  +
Sbjct: 89  AKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,147
Number of Sequences: 28952
Number of extensions: 345843
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3778328064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)