Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A07_e49_01.seq
(1453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 49 1e-06
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 49 1e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 48 2e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 46 1e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 38 0.003
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 33 0.099
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 29 1.2
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 29 2.1
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 28 2.8
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 28 3.7
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 4.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 8.6
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 49.2 bits (112), Expect = 1e-06
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +3
Query: 219 KNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM----NDRLWELEVDVNLNGV 386
+NVL +LDV ++ +++ I F R+D+L+NNAG+ + E ++ N
Sbjct: 14 ENVLVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTN 73
Query: 387 IRGTLLAYRFMGK-DRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
+ G L + + R H G+I+N +S +Y T YAI G++ A
Sbjct: 74 VFGALEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEA 127
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 49.2 bits (112), Expect = 1e-06
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +3
Query: 219 KNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM----NDRLWELEVDVNLNGV 386
+NVL +LDV ++ +++ I F R+D+L+NNAG+ + E ++ N
Sbjct: 14 ENVLVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTN 73
Query: 387 IRGTLLAYRFMGK-DRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
+ G L + + R H G+I+N +S +Y T YAI G++ A
Sbjct: 74 VFGALEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEA 127
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 48.4 bits (110), Expect = 2e-06
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Frame = +3
Query: 225 VLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAG------FMNDRLWELEVDVNLN-- 380
+L +LDVTD E AF F VDI+INNAG F + + E+ +N+N
Sbjct: 49 LLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFW 108
Query: 381 GVIRGTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTR 542
GV T A M ++ G GG I+ +S A P +Y A+ +A+ GL++
Sbjct: 109 GVAYITKEALNLM-RESG-KGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQ 160
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 46.4 bits (105), Expect = 1e-05
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = +3
Query: 228 LFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWEL----EVDVNLNGVIRG 395
L + DV+ Q E A I+ +D+LINNAG +D +E D +++ V+RG
Sbjct: 48 LALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRG 107
Query: 396 TLLAYRFM--GKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRAYGDQY 560
L R++ + GG IVN S + +P Y+A + LT+A +Y
Sbjct: 108 NYLTQRYVIPHMAKQGKGGSIVNIGSVN-GHIYLGSPAYSAAKAGLENLTKALAVRY 163
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 38.3 bits (85), Expect = 0.003
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Frame = +3
Query: 222 NVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM--NDRLWELEVD-------VN 374
+VL +LDV+D +EF +D+LINNAG D++ +L +D N
Sbjct: 58 SVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTN 117
Query: 375 LNGVIRGTLLAYR-FMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
+ G++ T F K++G I+N S A + V +Y +T A+ T A
Sbjct: 118 VLGMMAMTRAVLPIFYSKNKGD----ILNVGSIAGRESYVGGSVYCSTKSALAQFTSA 171
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 33.1 bits (72), Expect = 0.099
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 225 VLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMN 341
+ F RLD+ D+ +A I + ++ IL+NNAG MN
Sbjct: 95 IRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMN 133
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 479 CECCGSSVHDDTAMTAAVLSHESIR*ESTSDH 384
CEC G H + A T A L+H S + T H
Sbjct: 334 CECLGCLTHPNNATTLAALNHISALEKETISH 365
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 234 CRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMN-----DRLWE---LEVDVNLNGV 386
C+ DVT + E AF + F+ +DI++ N G D +E E++VNL GV
Sbjct: 75 CKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGV 133
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 28.3 bits (60), Expect = 2.8
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Frame = +3
Query: 288 IEEFNRVDILINNAGF---------MNDRLWELEVDVNLNGVIRGTLLAYRFMGKDRGXH 440
+++ +D+L+NN + ++D W+L N+ T A M
Sbjct: 116 LKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKS----- 170
Query: 441 GGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRAYGDQY 560
G IVN +S + YT+T AI TR +QY
Sbjct: 171 GSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQY 210
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.9 bits (59), Expect = 3.7
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Frame = +3
Query: 288 IEEFN-RVDILINNAGFM---------NDRLWELEVDVNLNGVIRGTLLAYRFMGKDRGX 437
+EE R+D++I NAG N+ +W V +NLNG T A K +G
Sbjct: 82 VEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYY-TAQAAGHHFKKQGK 140
Query: 438 HGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
I + S A Y AT A+ L RA
Sbjct: 141 GSLIFTASMSGHIANWPQQWASYHATKAAVKHLARA 176
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 252 DYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWELE 362
D P FE+ + +E+ N +DI+I +GF + ELE
Sbjct: 274 DVPNFED--ISKMEKENNLDIMIEASGFNKKQSKELE 308
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 230 QNVLPTVFGY-PVHQLFVR-QRQNRYRILIPWLLVLKNS 120
QN+L +V G PV +L +R+NR ++L+P+L L S
Sbjct: 827 QNLLMSVVGQVPVDELVEEVERRNRLKLLLPYLESLLQS 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,303
Number of Sequences: 5004
Number of extensions: 53186
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 810768624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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