Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A06_e41_02.seq
(1493 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000F306D0 Cluster: UPI0000F306D0 related cluster; n... 38 0.90
UniRef50_Q7KUL0 Cluster: CG9425-PB, isoform B; n=4; Diptera|Rep:... 37 1.6
UniRef50_UPI0000F2146D Cluster: PREDICTED: similar to alpha-1 ty... 36 2.7
UniRef50_Q4RYF7 Cluster: Chromosome 2 SCAF14976, whole genome sh... 36 3.6
UniRef50_Q5CVD5 Cluster: Putative uncharacterized protein; n=2; ... 35 4.8
UniRef50_Q3VXY1 Cluster: Putative uncharacterized protein; n=1; ... 35 6.3
UniRef50_Q96A83 Cluster: Collagen alpha-1(XXVI) chain precursor;... 35 6.3
UniRef50_UPI0000D9A6E9 Cluster: PREDICTED: similar to putative e... 34 8.3
UniRef50_A6GGW9 Cluster: Pkn9 associate protein 1; n=1; Plesiocy... 34 8.3
UniRef50_A1GBV0 Cluster: Collagen triple helix repeat precursor;... 34 8.3
>UniRef50_UPI0000F306D0 Cluster: UPI0000F306D0 related cluster; n=1;
Bos taurus|Rep: UPI0000F306D0 UniRef100 entry - Bos
Taurus
Length = 888
Score = 37.5 bits (83), Expect = 0.90
Identities = 36/135 (26%), Positives = 41/135 (30%), Gaps = 2/135 (1%)
Frame = +2
Query: 473 GETFLQAFPLSWXPXRQPXGXELGLARXXGAGSCXXXRXPXCGEXLPSGXXXXXSAGEPX 652
G + Q P P QP G A G S P S AG P
Sbjct: 640 GASHPQGPPSDTAPPAQPPGE----AGPTGLSSAAAAPGPRASRAASSPPAAGHRAGGPR 695
Query: 653 PXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIP--PGGPPXXXGPXGARGXXXP 826
P A +P P+ G G S R+ R P PGG P G+ G P
Sbjct: 696 PGAAVGPSPAPSGRSGRPGRPGRSGRSGRPGGSEGSGRPERPGGSGRPGRPGGSGGSGRP 755
Query: 827 GVRGAXXXLXGXXSR 871
G G G R
Sbjct: 756 GGSGRSGRPGGSGGR 770
>UniRef50_Q7KUL0 Cluster: CG9425-PB, isoform B; n=4; Diptera|Rep:
CG9425-PB, isoform B - Drosophila melanogaster (Fruit
fly)
Length = 2103
Score = 36.7 bits (81), Expect = 1.6
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +2
Query: 677 PXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARGXXXP 826
P P GG G R P +PPGGPP P GA G P
Sbjct: 1377 PPPHYGGGGGGGGHMGMRGPPPPAPHLRGMPPGGPPPTQQPGGAGGGGGP 1426
>UniRef50_UPI0000F2146D Cluster: PREDICTED: similar to alpha-1 type
XI collagen; n=1; Danio rerio|Rep: PREDICTED: similar to
alpha-1 type XI collagen - Danio rerio
Length = 616
Score = 35.9 bits (79), Expect = 2.7
Identities = 23/80 (28%), Positives = 27/80 (33%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQA 658
P PG P+ P G GPPGGI +G + E PP G G P +
Sbjct: 237 PGPPGPRGPQGPPGADGPQGPPGGIGGMGAVGEKGEQGEAGN--PGPPGEPGPGGPKGER 294
Query: 657 XGXGSPADXXXXXPEGRXSP 598
G P G P
Sbjct: 295 GEKGEAGPPGAAGPAGPKGP 314
>UniRef50_Q4RYF7 Cluster: Chromosome 2 SCAF14976, whole genome shotgun
sequence; n=9; Euteleostomi|Rep: Chromosome 2 SCAF14976,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1545
Score = 35.5 bits (78), Expect = 3.6
Identities = 25/78 (32%), Positives = 25/78 (32%)
Frame = -3
Query: 828 PGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQAXGX 649
PG P GP GPPG RGAR E P P G P
Sbjct: 885 PGPTGRVGPPGPAVVAGPPGPAGPVGKDGARGARGE--TGPAGRPGEAGPVGPGGPPGEK 942
Query: 648 GSPADXXXXXPEGRXSPQ 595
GSP P G PQ
Sbjct: 943 GSPGSDGAAGPAGIPGPQ 960
>UniRef50_Q5CVD5 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 546
Score = 35.1 bits (77), Expect = 4.8
Identities = 29/103 (28%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQA 658
P +P P P GP GPPG ++ G+ P P G P +
Sbjct: 415 PPSPASKGPPPPKGPPAPKGPPG-----PPSESEGSPASKGPPPSKGPP-APKGPPGPSS 468
Query: 657 XGXGSPADXXXXXPEGRXSP--QXGXRXXWXXPAPXXRASPNS 535
GSPA P+G P G PAP SP S
Sbjct: 469 ESEGSPATKGPPAPKGPPGPPESEGSPASKGPPAPKGPPSPAS 511
>UniRef50_Q3VXY1 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 629
Score = 34.7 bits (76), Expect = 6.3
Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGA---RLEXXXXPXXPPXFVGXGVPD 667
P T G P GP G P GG T VRGA R P PP G
Sbjct: 148 PATGGYPSADGPSGPASPGAPGGGGARRDSTSVRGALVPRAGAGRAPTRPPGSTGPA--P 205
Query: 666 HQAXGXGSPADXXXXXPE 613
QA GS D P+
Sbjct: 206 RQAPERGSAVDAGAARPD 223
>UniRef50_Q96A83 Cluster: Collagen alpha-1(XXVI) chain precursor;
n=25; Euteleostomi|Rep: Collagen alpha-1(XXVI) chain
precursor - Homo sapiens (Human)
Length = 441
Score = 34.7 bits (76), Expect = 6.3
Identities = 25/90 (27%), Positives = 26/90 (28%)
Frame = -3
Query: 867 DXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXF 688
D P A P P P GP GPPG RG E P PP
Sbjct: 179 DFLPDAIPLAHPVPRQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQTGE--KGPAGPPGL 236
Query: 687 VGXGVPDHQAXGXGSPADXXXXXPEGRXSP 598
+G P G P P G P
Sbjct: 237 LGPPGPRGLPGEMGRPGPPGPPGPAGNPGP 266
>UniRef50_UPI0000D9A6E9 Cluster: PREDICTED: similar to putative
emu2; n=1; Macaca mulatta|Rep: PREDICTED: similar to
putative emu2 - Macaca mulatta
Length = 500
Score = 34.3 bits (75), Expect = 8.3
Identities = 25/90 (27%), Positives = 26/90 (28%)
Frame = -3
Query: 867 DXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXF 688
D P A P P P GP GPPG RG E P PP
Sbjct: 220 DFFPDAIPLAHPGPRQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQTGE--KGPAGPPGL 277
Query: 687 VGXGVPDHQAXGXGSPADXXXXXPEGRXSP 598
+G P G P P G P
Sbjct: 278 LGPPGPQGLPGEMGRPGPPGPPGPAGSPGP 307
>UniRef50_A6GGW9 Cluster: Pkn9 associate protein 1; n=1;
Plesiocystis pacifica SIR-1|Rep: Pkn9 associate protein
1 - Plesiocystis pacifica SIR-1
Length = 237
Score = 34.3 bits (75), Expect = 8.3
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = +2
Query: 671 GTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRG 838
G P GG G + R P PPGGPP GP G G P +RG
Sbjct: 169 GPPGIRGPGGPPGGPPPNMRGPSG--------PPGGPPGMRGPGGPPGGPPPNMRG 216
>UniRef50_A1GBV0 Cluster: Collagen triple helix repeat precursor;
n=2; Salinispora|Rep: Collagen triple helix repeat
precursor - Salinispora arenicola CNS205
Length = 292
Score = 34.3 bits (75), Expect = 8.3
Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Frame = +2
Query: 596 CGEXLPSGXXXXXS-AGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIP- 769
CG PSG G P P +G P PT G G + T P
Sbjct: 77 CGHTCPSGPPGPPGPTGPPGP----TGPPGPTGPPGPTGPPGPTGPPGPTGPPGPTGPPG 132
Query: 770 PGGPPXXXGPXGARGXXXP 826
P GPP GP G G P
Sbjct: 133 PTGPPGPTGPPGPTGPPGP 151
Score = 34.3 bits (75), Expect = 8.3
Identities = 27/102 (26%), Positives = 27/102 (26%)
Frame = -3
Query: 825 GXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQAXGXG 646
G P P GP GPPG T G P PP G P G
Sbjct: 78 GHTCPSGPPGPPGPTGPPGPTGPPGPTGPPGP--TGPPGPTGPPGPTGPPGPTGPPGPTG 135
Query: 645 SPADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASPNSXPXGC 520
P P G P G P P P P C
Sbjct: 136 PPGPTGPPGPTGPPGP-TGPPGPTGPPGPTGPPGPTGPPGPC 176
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,806,718
Number of Sequences: 1657284
Number of extensions: 11644273
Number of successful extensions: 25823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24798
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 158488833675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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