Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A06_e41_02.seq
         (1493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    35   0.19 
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   9.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 505 RKRKGLKEGLPXLHXYLXKL 446
           RKRKGLKEG+P L  YL KL
Sbjct: 814 RKRKGLKEGIPALDNYLDKL 833


>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 29/99 (29%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
 Frame = -3

Query: 813 PRAPXGPXXXG--GPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQAXGXGSP 640
           P  P  P   G  GP G         VRGA  E        P  +G   P  +  G G P
Sbjct: 257 PGKPGKPGSRGQAGPAGKRGMIGDRGVRGA--EGNKGESGAPGLIGAEGPVGEEGGRGRP 314

Query: 639 ADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASPNSXPXG 523
                  PEG   P           AP  R   NS P G
Sbjct: 315 GKPGADGPEGLPGPAGDDGRPGENGAPGSRG--NSGPAG 351


>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 29/119 (24%), Positives = 33/119 (27%), Gaps = 1/119 (0%)
 Frame = -3

Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
           PA    P          G   P  P GP    GP G I     TD  G + +        
Sbjct: 191 PAGPAGPTGPKGDTGATGPTDPTGPTGPKGPTGPKGEIGATGPTDPTGPKGDTGATGPTG 250

Query: 696 PXFVGXGVPDHQAXG-XGSPADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASPNSXPXG 523
           P        D  A G  G   D     P G   P  G +       P     P + P G
Sbjct: 251 PTGPTGPKGDTGATGPTGPKGDTGATGPAGPTGP-TGPKGDTGATGPAGPTGP-TGPKG 307


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 25/89 (28%), Positives = 27/89 (30%)
 Frame = -3

Query: 876  PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
            PA    P      P   G M    P GP    GPPG         + G        P  P
Sbjct: 1660 PAPPPPPPPAPGPPGPDGPMGLPGPQGPDGPKGPPGPPGLPGPQGIPG----YPGAPAGP 1715

Query: 696  PXFVGXGVPDHQAXGXGSPADXXXXXPEG 610
            P   G   P   + G G P D     P G
Sbjct: 1716 PGRDGPMGPPGPSGGQGPPGDMGSMGPMG 1744



 Score = 29.1 bits (62), Expect = 9.6
 Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
 Frame = -3

Query: 828  PGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVG-XGVPDHQAXG 652
            PG   P  P GP    GPPG +       + G   E           VG  G P   A  
Sbjct: 1716 PGRDGPMGPPGPSGGQGPPGDMGSMGPMGMGG---EHKDFKRSASAQVGQYGYPSQAASY 1772

Query: 651  XGSPADXXXXXPEGRXSPQ 595
             G+        P G   PQ
Sbjct: 1773 IGTQGASGVDGPPGLAGPQ 1791


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,920,080
Number of Sequences: 59808
Number of extensions: 371608
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)