Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A06_e41_02.seq
(1493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 36 0.074
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.40
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.40
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 33 0.52
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.69
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.69
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 33 0.69
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 33 0.69
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 32 0.91
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 32 0.91
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 32 1.2
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 2.8
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 31 2.8
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 31 2.8
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 31 2.8
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 30 3.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 3.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 3.7
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 30 4.9
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 30 4.9
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 30 4.9
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 30 4.9
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 30 4.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 30 4.9
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 30 4.9
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 6.4
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 29 6.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 29 8.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 8.5
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 8.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 8.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 8.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 8.5
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 35.9 bits (79), Expect = 0.074
Identities = 25/83 (30%), Positives = 26/83 (31%)
Frame = -3
Query: 858 PXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGX 679
P P PG P P GP G PG A E P PP G
Sbjct: 187 PAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGPAGP 246
Query: 678 GVPDHQAXGXGSPADXXXXXPEG 610
PD Q+ G GS P G
Sbjct: 247 AGPDGQS-GSGSAGGPGPKGPPG 268
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.40
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 505 RKRKGLKEGLPXLHXYLXKL 446
RKRKGLKEG+P L YL K+
Sbjct: 833 RKRKGLKEGVPALDNYLDKM 852
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.40
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 505 RKRKGLKEGLPXLHXYLXKL 446
RKRKGLKEG+P L YL K+
Sbjct: 833 RKRKGLKEGVPALDNYLDKM 852
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 33.1 bits (72), Expect = 0.52
Identities = 26/94 (27%), Positives = 31/94 (32%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P +P G P P +G P P+ G G AP
Sbjct: 176 GPSGAPGQKGPSGAPGVPGQTGGASLPGPPGP----AGPPGPSGQPGSNGNAGAPG-APG 230
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 231 QVVDVPGTPGPAGPPGPPGPAGAPG--QPGQSGS 262
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 32.7 bits (71), Expect = 0.69
Identities = 26/94 (27%), Positives = 29/94 (30%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P G G AP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP----AGPPGPAGQPGSNGNAGAPG-APG 233
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 234 QVVDVPGTPGPAGPPGSPGPAGAPG--QPGQAGS 265
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 32.7 bits (71), Expect = 0.69
Identities = 26/94 (27%), Positives = 29/94 (30%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P G G AP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP----AGPPGPAGQPGSNGNAGAPG-APG 233
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 234 QVVDVPGTPGPAGPPGSPGPAGAPG--QPGQAGS 265
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 32.7 bits (71), Expect = 0.69
Identities = 26/94 (27%), Positives = 29/94 (30%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P G G AP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP----AGPPGPAGQPGSNGNAGAPG-APG 233
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 234 QVVDVPGTPGPAGPPGSPGPAGAPG--QPGQAGS 265
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 32.7 bits (71), Expect = 0.69
Identities = 26/94 (27%), Positives = 29/94 (30%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P G G AP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPPGP----AGPPGPAGQPGSNGNAGAPG-APG 233
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 234 QVVDVPGTPGPAGPPGSPGPAGAPG--QPGQAGS 265
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 32.3 bits (70), Expect = 0.91
Identities = 26/94 (27%), Positives = 30/94 (31%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P+ G G AP
Sbjct: 180 GPSGAPGQKGPSGAPGAPGQSGGASLPGPPGP----AGPPGPSGQPGSNGNAGAPG-APG 234
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 235 QVVDVPGTPGPAGPPGPPGPAGAPG--QPGQSGS 266
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.91
Identities = 22/67 (32%), Positives = 23/67 (34%)
Frame = +2
Query: 638 AGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARGX 817
AG P P SG P G G P T PPG PP G G+ G
Sbjct: 200 AGPPGPPGT-SGNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGPPG-PPGPAGNPGSAGA 257
Query: 818 XXPGVRG 838
PG G
Sbjct: 258 SEPGPAG 264
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 31.9 bits (69), Expect = 1.2
Identities = 26/93 (27%), Positives = 29/93 (31%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G P P+ G G AP
Sbjct: 177 GPSGAPGQKGPSGAPGQPGRSGGASLPGPPGP----AGPPGPSGQPGSNGNAGAPG-APG 231
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRG 838
V P GPP GP GA G PG G
Sbjct: 232 HVVDVPGTPGPAGPPGPAGPAGAPG--QPGQAG 262
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = +2
Query: 611 PSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXX 790
P GE P A +G P P G G A TS P GPP
Sbjct: 135 PGADGDAAGPGEAGP-AGPAGPPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAGPPGP 193
Query: 791 XGPXG 805
GP G
Sbjct: 194 AGPAG 198
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/81 (25%), Positives = 24/81 (29%)
Frame = +2
Query: 599 GEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGG 778
G P G +A P SG P G G A ++ P G
Sbjct: 169 GPAGPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAG 228
Query: 779 PPXXXGPXGARGXXXPGVRGA 841
PP GP G G GA
Sbjct: 229 PPGPAGPPGPDGASPTAAPGA 249
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 30.7 bits (66), Expect = 2.8
Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPG--GIXXXXXTDVRGARLE---XXXXPXXPPXFVGXGV 673
P TPG P+ GP G PG G D+ G ++ P PP VG
Sbjct: 104 PGTPGEQGPQGESGPDGDDGKPGLAGEVVAIVHDLPGGCIQCPPGRPGPRGPPGEVGPAG 163
Query: 672 PDHQAXGXGSPADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASP 541
P G P P G P G P P P
Sbjct: 164 PSGDNGRKGPPGP-----PGGPGGPGEGGDGEDAAPGPDAGYCP 202
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +2
Query: 671 GTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPG--GPPXXXGPXGARG-XXXPGVRGA 841
G+P P G G +S+ PPG GPP G GA G PGV GA
Sbjct: 147 GSPGPDGPPGVPGATGNPGSLGESSLGAGSPGPPGGVGPPGPNGTPGAPGDEGIPGVPGA 206
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 30.7 bits (66), Expect = 2.8
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = +2
Query: 611 PSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXX 790
PSG AG P P +G P G G P T PPG PP
Sbjct: 202 PSGGGEG-PAGPPGPPGP-AGNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGPPG-PPGP 258
Query: 791 XGPXGARGXXXPGVRG 838
G G+ G PG G
Sbjct: 259 AGNPGSAGASEPGPAG 274
Score = 29.1 bits (62), Expect = 8.5
Identities = 20/78 (25%), Positives = 23/78 (29%)
Frame = +1
Query: 793 GPXXXPGXHXXGGARGKXXXXGXXVARGXXSXRPXVXXXXXXGXXXXHGXYPXXGLPXSG 972
GP PG G GK G + + P G P G +G
Sbjct: 133 GPAGAPGKDGAPGEDGKAGNPGTAGSDAEAAAAPTASDFCFDCPPGPAG--PAGGPGPAG 190
Query: 973 PPXPNXXXXGXPPGXGXG 1026
PP P P G G G
Sbjct: 191 PPGPAGADGNTPSGGGEG 208
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 671 GTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGA-RGXXXPGVRG 838
G P P G G + S+ P GPP GP GA G PG G
Sbjct: 143 GPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAG 199
Score = 29.9 bits (64), Expect = 4.9
Identities = 24/107 (22%), Positives = 26/107 (24%)
Frame = -3
Query: 840 APRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQ 661
+P G P P GP G PG R P PP G PD
Sbjct: 132 SPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPP---GPPGPDGA 188
Query: 660 AXGXGSPADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASPNSXPXGC 520
G P P G P +P S C
Sbjct: 189 PGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQDGAPGSDAAYC 235
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 671 GTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGA-RGXXXPGVRG 838
G P P G G + S+ P GPP GP GA G PG G
Sbjct: 143 GPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAG 199
Score = 29.9 bits (64), Expect = 4.9
Identities = 24/107 (22%), Positives = 26/107 (24%)
Frame = -3
Query: 840 APRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVGXGVPDHQ 661
+P G P P GP G PG R P PP G PD
Sbjct: 132 SPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPP---GPPGPDGA 188
Query: 660 AXGXGSPADXXXXXPEGRXSPQXGXRXXWXXPAPXXRASPNSXPXGC 520
G P P G P +P S C
Sbjct: 189 PGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQDGAPGSDAAYC 235
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 3.7
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +2
Query: 638 AGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARG- 814
AG P P +GT G G + +A S P GPP GP G G
Sbjct: 136 AGPPGPPGE-AGTDGEPGQAGQDGQPGQAGQADSGSSGQACITCPAGPPGPPGPDGNAGP 194
Query: 815 XXXPGVRG 838
PGV G
Sbjct: 195 AGAPGVPG 202
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = +2
Query: 644 EPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARGXXX 823
EP P A +G P P G G TS P GPP GP G
Sbjct: 199 EPGP-AGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGPAGEDAYAQ 257
Query: 824 PGVRG 838
P G
Sbjct: 258 PSPAG 262
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGG 766
P + +P PG P+ P GP G PGG
Sbjct: 206 PGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGG 242
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGG 766
P + +P PG P+ P GP G PGG
Sbjct: 206 PGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGG 242
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGG 766
P + +P PG P+ P GP G PGG
Sbjct: 206 PGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGG 242
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 29.9 bits (64), Expect = 4.9
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Frame = +2
Query: 638 AGEPXPXAWWSGTPXPTNXGGXXGXXXXSNR--APRTSVXXXXXIPPGGPPXXXGPXGAR 811
AG P P G+P P G G + P PGGPP GP G
Sbjct: 128 AGPPGPKGS-PGSPGPNGVPGVDGKPGHDSLDVTPEPQDTGLCYYCPGGPPGAPGPNGRP 186
Query: 812 GXXXPGVRGAXXXL 853
G G++GA L
Sbjct: 187 GLR--GMKGADGGL 198
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.9 bits (64), Expect = 4.9
Identities = 25/83 (30%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Frame = -3
Query: 840 APRTPGXMXPRAPXGPXXXGGPPG-----GIXXXXXTDVRGARL-EXXXXPXXPPXFVGX 679
AP PG P GP GPPG G D L P PP G
Sbjct: 175 APGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPPGPPGQ 234
Query: 678 GVPDHQAXGXGSPADXXXXXPEG 610
PD Q G P P G
Sbjct: 235 AGPDGQPGAPGGPGTPGSKGPPG 257
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGG 766
P R P PG P+ P GP G PGG
Sbjct: 211 PGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGAPGG 247
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 29.9 bits (64), Expect = 4.9
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 671 GTPXPTNXGGXXGXXXXSNRAPRTSVXXXXXIPPGGPPXXXGPXGARG-XXXPGVRG 838
G P P G G R P PP PP GP GA G PG G
Sbjct: 184 GRPGPNGKAGANGLNGNPGRPPEAPCEPVT--PPPCPPCPAGPKGAPGQAGYPGADG 238
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 6.4
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Frame = -3
Query: 840 APRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXX---PXXPPXFVGXGVP 670
AP G P P GP GP G G E P PP G G P
Sbjct: 172 APGDAGKDGPPGPPGPDGDSGPNGEAGPNGEPGAPGKDGEKGKGEPGPAGPPGPPGPGGP 231
Query: 669 DHQAXGXGSPADXXXXXPEGR 607
A G GS P G+
Sbjct: 232 PGDAGGAGSDGAPGPQGPPGQ 252
Score = 29.1 bits (62), Expect = 8.5
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -3
Query: 825 GXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPP---XFVGXGVPDHQAX 655
G P P GP GGPPG D GA + P PP G PD Q
Sbjct: 215 GEPGPAGPPGPPGPGGPPG--------DAGGAGSDGAPGPQGPPGQDGTPGNAGPDGQPG 266
Query: 654 GXGSP 640
G P
Sbjct: 267 SPGGP 271
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 29.5 bits (63), Expect = 6.4
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
P TPG P+ GP GPPG T G + P P
Sbjct: 209 PGTPGSAGPKGNAGPAGPPGPPGYPGRPGETGDHGKTIAGEAPPGPP 255
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPGG 766
P PG P+ P GP G PGG
Sbjct: 219 PGAPGQAGPQGPPGPAGSPGAPGG 242
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/89 (26%), Positives = 24/89 (26%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
P D P P PG P P GP G PG P P
Sbjct: 167 PGPDGNPGSPA-GPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP 225
Query: 696 PXFVGXGVPDHQAXGXGSPADXXXXXPEG 610
P G D A G G P P G
Sbjct: 226 PGPAGPAGND-GAPGTGGPGPAGPKGPPG 253
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Frame = -3
Query: 840 APRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXPPXFVG-XGVP-- 670
AP PG P+ P G G PG D + +E P PP G G P
Sbjct: 191 APGAPGNDGPQGPPGQDGAAGQPG-------PDGQPGVVEEVAVPAGPPGPPGPQGAPGT 243
Query: 669 DHQAXGXGSPADXXXXXPEG 610
D Q G P P G
Sbjct: 244 DGQPGSAGQPGQDGPQGPAG 263
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/89 (26%), Positives = 24/89 (26%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
P D P P PG P P GP G PG P P
Sbjct: 167 PGPDGNPGSPA-GPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP 225
Query: 696 PXFVGXGVPDHQAXGXGSPADXXXXXPEG 610
P G D A G G P P G
Sbjct: 226 PGPAGPAGND-GAPGTGGPGPAGPKGPPG 253
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.1 bits (62), Expect = 8.5
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Frame = -3
Query: 837 PRTPGXMXPRAPXGPXXXGGPPG--GIXXXXXTDVRGARLE---XXXXPXXPPXFVGXGV 673
P TPG P+ GP G PG G D+ G ++ P PP VG
Sbjct: 104 PGTPGEQGPQGESGPDGDDGKPGLAGEVVAIVHDLPGGCIQCPPGRPGPRGPPGEVGPAG 163
Query: 672 PDHQAXGXGSP 640
P G P
Sbjct: 164 PSGDNGRKGPP 174
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/89 (26%), Positives = 24/89 (26%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
P D P P PG P P GP G PG P P
Sbjct: 167 PGPDGNPGSPA-GPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP 225
Query: 696 PXFVGXGVPDHQAXGXGSPADXXXXXPEG 610
P G D A G G P P G
Sbjct: 226 PGPAGPAGND-GAPGTGGPGPAGPKGPPG 253
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 8.5
Identities = 24/89 (26%), Positives = 24/89 (26%)
Frame = -3
Query: 876 PARDXXPXXXXFAPRTPGXMXPRAPXGPXXXGGPPGGIXXXXXTDVRGARLEXXXXPXXP 697
P D P P PG P P GP G PG P P
Sbjct: 167 PGPDGNPGSPA-GPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP 225
Query: 696 PXFVGXGVPDHQAXGXGSPADXXXXXPEG 610
P G D A G G P P G
Sbjct: 226 PGPAGPAGND-GAPGTGGPGPAGPKGPPG 253
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.1 bits (62), Expect = 8.5
Identities = 25/94 (26%), Positives = 30/94 (31%)
Frame = +2
Query: 560 GAGSCXXXRXPXCGEXLPSGXXXXXSAGEPXPXAWWSGTPXPTNXGGXXGXXXXSNRAPR 739
G + P P G P P +G+P + G G AP
Sbjct: 214 GPSGAPGQKGPSGAPGAPGQSGGSALPGPPGP----AGSPGRSGQPGSNGNVGAPG-APG 268
Query: 740 TSVXXXXXIPPGGPPXXXGPXGARGXXXPGVRGA 841
V P GPP GP GA G PG G+
Sbjct: 269 QVVDVPGAPGPAGPPGPPGPSGAPG--HPGQAGS 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,055
Number of Sequences: 27780
Number of extensions: 305078
Number of successful extensions: 1752
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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