Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A05_e33_01.seq
         (1560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     64   3e-10
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     63   7e-10
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     62   1e-09
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.3  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   10.0 
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   10.0 

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPV----KNIIR 271
           FSKEPNN+ N++SY+++GL +KK V V     ++   ++   K +  NKP     K+++R
Sbjct: 33  FSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKETAVVLSTTKTEKQNKPASLYHKSVMR 92

Query: 272 RPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 394
           + F+  A+      K  +  N+YR DLTK  L R SA+ RS
Sbjct: 93  KEFRKMAK----AVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 62.9 bits (146), Expect = 7e-10
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPVKNIIRRPFK 283
           F+KEPNN+ N++SY+++GL +KK V +  +  +    ++   K K  N P K   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 284 AGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 394
              R+     K  +  N+YR DLTK  L R S++ RS
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 62.1 bits (144), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPVKNIIRRPFK 283
           F+KEPNN+ N++SY+++GL +KK V +  +  +    ++   K K  N P K   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 284 AGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 394
              R+     K  +  N+YR DLTK  L R S++ RS
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 544 ITIHWPSFYNVV-TGKTLALPNLIALQH 624
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 606 LNRLAAHPPFASWRNSEEARTDRPXQQLRXLNGEWQIVSVNILLK 740
           L+R +   PF SW N  +A  D+    L  LNG    +   + LK
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 443


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 606 LNRLAAHPPFASWRNSEEARTDRPXQQLRXLNGEWQIVSVNILLK 740
           L+R +   PF SW N  +A  D+    L  LNG    +   + LK
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,678,415
Number of Sequences: 37544
Number of extensions: 555421
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)