Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A05_e33_01.seq
(1560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 99 2e-20
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 99 2e-20
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 99 2e-20
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 99 2e-20
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 99 5e-20
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 53 3e-06
AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28 p... 48 1e-04
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 31 8.6
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 31 8.6
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein. 31 8.6
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 99 bits (238), Expect = 2e-20
Identities = 46/100 (46%), Positives = 62/100 (62%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+ KP + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84
Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
AR +L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 99 bits (238), Expect = 2e-20
Identities = 46/100 (46%), Positives = 62/100 (62%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+ KP + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84
Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
AR +L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 99 bits (238), Expect = 2e-20
Identities = 46/100 (46%), Positives = 62/100 (62%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+ KP + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINR 84
Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
AR +L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 99 bits (238), Expect = 2e-20
Identities = 46/100 (46%), Positives = 62/100 (62%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+ KP + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84
Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
AR +L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 98.7 bits (235), Expect = 5e-20
Identities = 45/100 (45%), Positives = 62/100 (62%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+ KP + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84
Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
AR +L + +++ N YR DL A +RRASAILR+Q+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPV 124
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 52.8 bits (121), Expect = 3e-06
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2
Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKK 232
+S EPNN+ NS+RYNGLIH+K VGV D KG +V K+
Sbjct: 33 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74
>AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28
protein.
Length = 53
Score = 47.6 bits (108), Expect = 1e-04
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 266 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
+R AR +L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 4 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 chain
protein.
Length = 1670
Score = 31.5 bits (68), Expect = 8.6
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Frame = +2
Query: 968 FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
F G+ GP P P +G P I + G+ G G + KG P E
Sbjct: 896 FPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 955
Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
PG F G GN P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVP 975
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 31.5 bits (68), Expect = 8.6
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Frame = +2
Query: 968 FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
F G+ GP P P +G P I + G+ G G + KG P E
Sbjct: 896 FPGAIGPPGPPGNPGRPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 955
Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
PG F G GN P
Sbjct: 956 EPGLKGFAGNPGEKGNRGVP 975
>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
Length = 1084
Score = 31.5 bits (68), Expect = 8.6
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Frame = +2
Query: 968 FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
F G+ GP P P +G P I + G+ G G + KG P E
Sbjct: 310 FPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 369
Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
PG F G GN P
Sbjct: 370 EPGLKGFAGNPGEKGNRGVP 389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,736,630
Number of Sequences: 237096
Number of extensions: 3346559
Number of successful extensions: 8390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8386
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23193116150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -