Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A05_e33_01.seq
         (1560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    39   0.008
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    30   3.9  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    30   3.9  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    30   3.9  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    30   3.9  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    30   3.9  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 32/99 (32%), Positives = 48/99 (48%)
 Frame = +2

Query: 101 KPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPF 280
           K FS E  N+  +NS +Y+GL +K A+ V  +   KG  +  K  K   +P K +     
Sbjct: 25  KRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAKGVVVSTKNEKG--RPAKAVTTSTL 80

Query: 281 KAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQ 397
              ++  +   +RL K N       K   RRA+AI+RSQ
Sbjct: 81  ---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIVRSQ 115


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 268 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV 122
           D+   + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++
Sbjct: 92  DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLI 138


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  ALXTSGXPPGLQXIRHEXXRRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 187
           A    G PPG   +RHE   R   +  SK P + +N+ +     +  K+  GV
Sbjct: 591 AFDVMGGPPGPTSVRHEETIRKVSEEASKRPLDESNIGNRLLKSMGWKEGQGV 643


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  ALXTSGXPPGLQXIRHEXXRRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 187
           A    G PPG   +RHE   R   +  SK P + +N+ +     +  K+  GV
Sbjct: 734 AFDVMGGPPGPTSVRHEETIRKVSEEASKRPLDESNIGNRLLKSMGWKEGQGV 786


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  ALXTSGXPPGLQXIRHEXXRRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 187
           A    G PPG   +RHE   R   +  SK P + +N+ +     +  K+  GV
Sbjct: 762 AFDVMGGPPGPTSVRHEETIRKVSEEASKRPLDESNIGNRLLKSMGWKEGQGV 814


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  ALXTSGXPPGLQXIRHEXXRRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 187
           A    G PPG   +RHE   R   +  SK P + +N+ +     +  K+  GV
Sbjct: 820 AFDVMGGPPGPTSVRHEETIRKVSEEASKRPLDESNIGNRLLKSMGWKEGQGV 872


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  ALXTSGXPPGLQXIRHEXXRRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 187
           A    G PPG   +RHE   R   +  SK P + +N+ +     +  K+  GV
Sbjct: 821 AFDVMGGPPGPTSVRHEETIRKVSEEASKRPLDESNIGNRLLKSMGWKEGQGV 873


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,256,404
Number of Sequences: 27780
Number of extensions: 451195
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4504441732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)